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Functional characterization of fungal lytic polysaccharide monooxygenases for cellulose surface oxidation
BACKGROUND: Microbial lytic polysaccharide monooxygenases (LPMOs) cleave diverse biomass polysaccharides, including cellulose and hemicelluloses, by initial oxidation at C1 or C4 of glycan chains. Within the Carbohydrate-Active Enzymes (CAZy) classification, Auxiliary Activity Family 9 (AA9) compris...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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BioMed Central
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10486138/ https://www.ncbi.nlm.nih.gov/pubmed/37679837 http://dx.doi.org/10.1186/s13068-023-02383-3 |
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author | Mathieu, Yann Raji, Olanrewaju Bellemare, Annie Di Falco, Marcos Nguyen, Thi Truc Minh Viborg, Alexander Holm Tsang, Adrian Master, Emma Brumer, Harry |
author_facet | Mathieu, Yann Raji, Olanrewaju Bellemare, Annie Di Falco, Marcos Nguyen, Thi Truc Minh Viborg, Alexander Holm Tsang, Adrian Master, Emma Brumer, Harry |
author_sort | Mathieu, Yann |
collection | PubMed |
description | BACKGROUND: Microbial lytic polysaccharide monooxygenases (LPMOs) cleave diverse biomass polysaccharides, including cellulose and hemicelluloses, by initial oxidation at C1 or C4 of glycan chains. Within the Carbohydrate-Active Enzymes (CAZy) classification, Auxiliary Activity Family 9 (AA9) comprises the first and largest group of fungal LPMOs, which are often also found in tandem with non-catalytic carbohydrate-binding modules (CBMs). LPMOs originally attracted attention for their ability to potentiate complete biomass deconstruction to monosaccharides. More recently, LPMOs have been applied for selective surface modification of insoluble cellulose and chitin. RESULTS: To further explore the catalytic diversity of AA9 LPMOs, over 17,000 sequences were extracted from public databases, filtered, and used to construct a sequence similarity network (SSN) comprising 33 phylogenetically supported clusters. From these, 32 targets were produced successfully in the industrial filamentous fungus Aspergillus niger, 25 of which produced detectable LPMO activity. Detailed biochemical characterization of the eight most highly produced targets revealed individual C1, C4, and mixed C1/C4 regiospecificities of cellulose surface oxidation, different redox co-substrate preferences, and CBM targeting effects. Specifically, the presence of a CBM correlated with increased formation of soluble oxidized products and a more localized pattern of surface oxidation, as indicated by carbonyl-specific fluorescent labeling. On the other hand, LPMOs without native CBMs were associated with minimal release of soluble products and comparatively dispersed oxidation pattern. CONCLUSIONS: This work provides insight into the structural and functional diversity of LPMOs, and highlights the need for further detailed characterization of individual enzymes to identify those best suited for cellulose saccharification versus surface functionalization toward biomaterials applications. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13068-023-02383-3. |
format | Online Article Text |
id | pubmed-10486138 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-104861382023-09-09 Functional characterization of fungal lytic polysaccharide monooxygenases for cellulose surface oxidation Mathieu, Yann Raji, Olanrewaju Bellemare, Annie Di Falco, Marcos Nguyen, Thi Truc Minh Viborg, Alexander Holm Tsang, Adrian Master, Emma Brumer, Harry Biotechnol Biofuels Bioprod Research BACKGROUND: Microbial lytic polysaccharide monooxygenases (LPMOs) cleave diverse biomass polysaccharides, including cellulose and hemicelluloses, by initial oxidation at C1 or C4 of glycan chains. Within the Carbohydrate-Active Enzymes (CAZy) classification, Auxiliary Activity Family 9 (AA9) comprises the first and largest group of fungal LPMOs, which are often also found in tandem with non-catalytic carbohydrate-binding modules (CBMs). LPMOs originally attracted attention for their ability to potentiate complete biomass deconstruction to monosaccharides. More recently, LPMOs have been applied for selective surface modification of insoluble cellulose and chitin. RESULTS: To further explore the catalytic diversity of AA9 LPMOs, over 17,000 sequences were extracted from public databases, filtered, and used to construct a sequence similarity network (SSN) comprising 33 phylogenetically supported clusters. From these, 32 targets were produced successfully in the industrial filamentous fungus Aspergillus niger, 25 of which produced detectable LPMO activity. Detailed biochemical characterization of the eight most highly produced targets revealed individual C1, C4, and mixed C1/C4 regiospecificities of cellulose surface oxidation, different redox co-substrate preferences, and CBM targeting effects. Specifically, the presence of a CBM correlated with increased formation of soluble oxidized products and a more localized pattern of surface oxidation, as indicated by carbonyl-specific fluorescent labeling. On the other hand, LPMOs without native CBMs were associated with minimal release of soluble products and comparatively dispersed oxidation pattern. CONCLUSIONS: This work provides insight into the structural and functional diversity of LPMOs, and highlights the need for further detailed characterization of individual enzymes to identify those best suited for cellulose saccharification versus surface functionalization toward biomaterials applications. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13068-023-02383-3. BioMed Central 2023-09-07 /pmc/articles/PMC10486138/ /pubmed/37679837 http://dx.doi.org/10.1186/s13068-023-02383-3 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Mathieu, Yann Raji, Olanrewaju Bellemare, Annie Di Falco, Marcos Nguyen, Thi Truc Minh Viborg, Alexander Holm Tsang, Adrian Master, Emma Brumer, Harry Functional characterization of fungal lytic polysaccharide monooxygenases for cellulose surface oxidation |
title | Functional characterization of fungal lytic polysaccharide monooxygenases for cellulose surface oxidation |
title_full | Functional characterization of fungal lytic polysaccharide monooxygenases for cellulose surface oxidation |
title_fullStr | Functional characterization of fungal lytic polysaccharide monooxygenases for cellulose surface oxidation |
title_full_unstemmed | Functional characterization of fungal lytic polysaccharide monooxygenases for cellulose surface oxidation |
title_short | Functional characterization of fungal lytic polysaccharide monooxygenases for cellulose surface oxidation |
title_sort | functional characterization of fungal lytic polysaccharide monooxygenases for cellulose surface oxidation |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10486138/ https://www.ncbi.nlm.nih.gov/pubmed/37679837 http://dx.doi.org/10.1186/s13068-023-02383-3 |
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