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Fungi of quarantine concern for China I: Dothideomycetes

The current list of Chinese quarantine pests includes 130 fungal species. However, recent changes in the taxonomy of fungi following the one fungus = one name initiative and the implementation of DNA phylogeny in taxonomic revisions, resulted in many changes of these species names, necessitating an...

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Autores principales: Zhao, P., Crous, P.W., Hou, L.W., Duan, W.J., Cai, L., Ma, Z.Y., Liu, F.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nationaal Herbarium Nederland & Westerdijk Fungal Biodiversity Institute 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10486631/
https://www.ncbi.nlm.nih.gov/pubmed/37693796
http://dx.doi.org/10.3767/persoonia.2021.47.02
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author Zhao, P.
Crous, P.W.
Hou, L.W.
Duan, W.J.
Cai, L.
Ma, Z.Y.
Liu, F.
author_facet Zhao, P.
Crous, P.W.
Hou, L.W.
Duan, W.J.
Cai, L.
Ma, Z.Y.
Liu, F.
author_sort Zhao, P.
collection PubMed
description The current list of Chinese quarantine pests includes 130 fungal species. However, recent changes in the taxonomy of fungi following the one fungus = one name initiative and the implementation of DNA phylogeny in taxonomic revisions, resulted in many changes of these species names, necessitating an update of the current list. In addition, many quarantine fungi lack modern morphological descriptions and authentic DNA sequences, posing significant challenges for the development of diagnostic protocols. The aim of the present study was to review the taxonomy and names of the 33 Chinese quarantine fungi in Dothideomycetes, and provide reliable DNA barcodes to facilitate rapid identification. Of these, 23 names were updated according to the single name nomenclature system, including one new combination, namely Cophinforma tumefaciens comb. nov. (syn. Sphaeropsis tumefaciens). On the basis of phylogenetic analyses and morphological comparisons, a new genus Xenosphaeropsis is introduced to accommodate the monotypic species Xenosphaeropsis pyriputrescens comb. nov. (syn. Sphaeropsis pyriputrescens), the causal agent of a post-harvest disease of pears. Furthermore, four lectotypes (Ascochyta petroselini, Mycosphaerella ligulicola, Physalospora laricina, Sphaeria lingam), three epitypes (Ascochyta petroselini, Phoma lycopersici, Sphaeria lingam), and two neotypes (Ascochyta pinodella, Deuterophoma tracheiphila) are designated to stabilise the use of these names. A further four reference strains are introduced for Cophinforma tumefaciens, Helminthosporium solani, Mycocentrospora acerina, and Septoria linicola. In addition, to assist future studies on these important pathogens, we sequenced and assembled whole genomes for 17 species, including Alternaria triticina, Boeremia foveata, B. lycopersici, Cladosporium cucumerinum, Didymella glomerata, Didymella pinodella, Diplodia mutila, Helminthosporium solani, Mycocentrospora acerina, Neofusicoccum laricinum, Parastagonospora pseudonodorum, Plenodomus libanotidis, Plenodomus lingam, Plenodomus tracheiphilus, Septoria petroselini, Stagonosporopsis chrysanthemi, and Xenosphaeropsis pyriputrescens. Citation: Zhao P, Crous PW, Hou LW, et al. 2021. Fungi of quarantine concern for China I: Dothideomycetes. Persoonia 47: 45–105. https://doi.org/10.3767/persoonia.2021.47.02.
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spelling pubmed-104866312023-09-08 Fungi of quarantine concern for China I: Dothideomycetes Zhao, P. Crous, P.W. Hou, L.W. Duan, W.J. Cai, L. Ma, Z.Y. Liu, F. Persoonia Research Article The current list of Chinese quarantine pests includes 130 fungal species. However, recent changes in the taxonomy of fungi following the one fungus = one name initiative and the implementation of DNA phylogeny in taxonomic revisions, resulted in many changes of these species names, necessitating an update of the current list. In addition, many quarantine fungi lack modern morphological descriptions and authentic DNA sequences, posing significant challenges for the development of diagnostic protocols. The aim of the present study was to review the taxonomy and names of the 33 Chinese quarantine fungi in Dothideomycetes, and provide reliable DNA barcodes to facilitate rapid identification. Of these, 23 names were updated according to the single name nomenclature system, including one new combination, namely Cophinforma tumefaciens comb. nov. (syn. Sphaeropsis tumefaciens). On the basis of phylogenetic analyses and morphological comparisons, a new genus Xenosphaeropsis is introduced to accommodate the monotypic species Xenosphaeropsis pyriputrescens comb. nov. (syn. Sphaeropsis pyriputrescens), the causal agent of a post-harvest disease of pears. Furthermore, four lectotypes (Ascochyta petroselini, Mycosphaerella ligulicola, Physalospora laricina, Sphaeria lingam), three epitypes (Ascochyta petroselini, Phoma lycopersici, Sphaeria lingam), and two neotypes (Ascochyta pinodella, Deuterophoma tracheiphila) are designated to stabilise the use of these names. A further four reference strains are introduced for Cophinforma tumefaciens, Helminthosporium solani, Mycocentrospora acerina, and Septoria linicola. In addition, to assist future studies on these important pathogens, we sequenced and assembled whole genomes for 17 species, including Alternaria triticina, Boeremia foveata, B. lycopersici, Cladosporium cucumerinum, Didymella glomerata, Didymella pinodella, Diplodia mutila, Helminthosporium solani, Mycocentrospora acerina, Neofusicoccum laricinum, Parastagonospora pseudonodorum, Plenodomus libanotidis, Plenodomus lingam, Plenodomus tracheiphilus, Septoria petroselini, Stagonosporopsis chrysanthemi, and Xenosphaeropsis pyriputrescens. Citation: Zhao P, Crous PW, Hou LW, et al. 2021. Fungi of quarantine concern for China I: Dothideomycetes. Persoonia 47: 45–105. https://doi.org/10.3767/persoonia.2021.47.02. Nationaal Herbarium Nederland & Westerdijk Fungal Biodiversity Institute 2021-08-25 2021-12 /pmc/articles/PMC10486631/ /pubmed/37693796 http://dx.doi.org/10.3767/persoonia.2021.47.02 Text en © 2021 Naturalis Biodiversity Center & Westerdijk Fungal Biodiversity Institute https://creativecommons.org/licenses/by-nc-nd/3.0/You are free to share - to copy, distribute and transmit the work, under the following conditions: Attribution: You must attribute the work in the manner specified by the author or licensor (but not in any way that suggests that they endorse you or your use of the work). Non-commercial: You may not use this work for commercial purposes. No derivative works: You may not alter, transform, or build upon this work. For any reuse or distribution, you must make clear to others the license terms of this work, which can be found at http://creativecommons.org/licenses/by-nc-nd/3.0/legalcode (https://creativecommons.org/licenses/by-nc-nd/3.0/) . Any of the above conditions can be waived if you get permission from the copyright holder. Nothing in this license impairs or restricts the author’s moral rights.
spellingShingle Research Article
Zhao, P.
Crous, P.W.
Hou, L.W.
Duan, W.J.
Cai, L.
Ma, Z.Y.
Liu, F.
Fungi of quarantine concern for China I: Dothideomycetes
title Fungi of quarantine concern for China I: Dothideomycetes
title_full Fungi of quarantine concern for China I: Dothideomycetes
title_fullStr Fungi of quarantine concern for China I: Dothideomycetes
title_full_unstemmed Fungi of quarantine concern for China I: Dothideomycetes
title_short Fungi of quarantine concern for China I: Dothideomycetes
title_sort fungi of quarantine concern for china i: dothideomycetes
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10486631/
https://www.ncbi.nlm.nih.gov/pubmed/37693796
http://dx.doi.org/10.3767/persoonia.2021.47.02
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