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Variational Mode Decomposition for Raman Spectral Denoising

As a fast and non-destructive spectroscopic analysis technique, Raman spectroscopy has been widely applied in chemistry. However, noise is usually unavoidable in Raman spectra. Hence, denoising is an important step before Raman spectral analysis. A novel spectral denoising method based on variationa...

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Autores principales: Bian, Xihui, Shi, Zitong, Shao, Yingjie, Chu, Yuanyuan, Tan, Xiaoyao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10490040/
https://www.ncbi.nlm.nih.gov/pubmed/37687235
http://dx.doi.org/10.3390/molecules28176406
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author Bian, Xihui
Shi, Zitong
Shao, Yingjie
Chu, Yuanyuan
Tan, Xiaoyao
author_facet Bian, Xihui
Shi, Zitong
Shao, Yingjie
Chu, Yuanyuan
Tan, Xiaoyao
author_sort Bian, Xihui
collection PubMed
description As a fast and non-destructive spectroscopic analysis technique, Raman spectroscopy has been widely applied in chemistry. However, noise is usually unavoidable in Raman spectra. Hence, denoising is an important step before Raman spectral analysis. A novel spectral denoising method based on variational mode decomposition (VMD) was introduced to solve the above problem. The spectrum is decomposed into a series of modes (uk) by VMD. Then, the high-frequency noise modes are removed and the remaining modes are reconstructed to obtain the denoised spectrum. The proposed method was verified by two artificial noised signals and two Raman spectra of inorganic materials, i.e., MnCo ISAs/CN and Fe-NCNT. For comparison, empirical mode decomposition (EMD), Savitzky–Golay (SG) smoothing, and discrete wavelet transformation (DWT) are also investigated. At the same time, signal-to-noise ratio (SNR) was introduced as evaluation indicators to verify the performance of the proposed method. The results show that compared with EMD, VMD can significantly improve mode mixing and the endpoint effect. Moreover, the Raman spectrum by VMD denoising is more excellent than that of EMD, SG smoothing and DWT in terms of visualization and SNR. For the small sharp peaks, some information is lost after denoising by EMD, SG smoothing, DWT and VMD while VMD loses fewest information. Therefore, VMD may be an alternative method for Raman spectral denoising.
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spelling pubmed-104900402023-09-09 Variational Mode Decomposition for Raman Spectral Denoising Bian, Xihui Shi, Zitong Shao, Yingjie Chu, Yuanyuan Tan, Xiaoyao Molecules Article As a fast and non-destructive spectroscopic analysis technique, Raman spectroscopy has been widely applied in chemistry. However, noise is usually unavoidable in Raman spectra. Hence, denoising is an important step before Raman spectral analysis. A novel spectral denoising method based on variational mode decomposition (VMD) was introduced to solve the above problem. The spectrum is decomposed into a series of modes (uk) by VMD. Then, the high-frequency noise modes are removed and the remaining modes are reconstructed to obtain the denoised spectrum. The proposed method was verified by two artificial noised signals and two Raman spectra of inorganic materials, i.e., MnCo ISAs/CN and Fe-NCNT. For comparison, empirical mode decomposition (EMD), Savitzky–Golay (SG) smoothing, and discrete wavelet transformation (DWT) are also investigated. At the same time, signal-to-noise ratio (SNR) was introduced as evaluation indicators to verify the performance of the proposed method. The results show that compared with EMD, VMD can significantly improve mode mixing and the endpoint effect. Moreover, the Raman spectrum by VMD denoising is more excellent than that of EMD, SG smoothing and DWT in terms of visualization and SNR. For the small sharp peaks, some information is lost after denoising by EMD, SG smoothing, DWT and VMD while VMD loses fewest information. Therefore, VMD may be an alternative method for Raman spectral denoising. MDPI 2023-09-02 /pmc/articles/PMC10490040/ /pubmed/37687235 http://dx.doi.org/10.3390/molecules28176406 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Bian, Xihui
Shi, Zitong
Shao, Yingjie
Chu, Yuanyuan
Tan, Xiaoyao
Variational Mode Decomposition for Raman Spectral Denoising
title Variational Mode Decomposition for Raman Spectral Denoising
title_full Variational Mode Decomposition for Raman Spectral Denoising
title_fullStr Variational Mode Decomposition for Raman Spectral Denoising
title_full_unstemmed Variational Mode Decomposition for Raman Spectral Denoising
title_short Variational Mode Decomposition for Raman Spectral Denoising
title_sort variational mode decomposition for raman spectral denoising
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10490040/
https://www.ncbi.nlm.nih.gov/pubmed/37687235
http://dx.doi.org/10.3390/molecules28176406
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