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Bader’s Topological Bond Path Does Not Necessarily Indicate Stabilizing Interaction—Proof Studies Based on the Ng@[3(n)]cyclophane Endohedral Complexes
According to Bader’s quantum theory of atoms in molecules (QTAIM), the simultaneous presence of a bond path and the corresponding bond critical point between any two atoms is both a necessary and sufficient condition for the atoms to be bonded to one another. In principle, this means that this pair...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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MDPI
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10490063/ https://www.ncbi.nlm.nih.gov/pubmed/37687183 http://dx.doi.org/10.3390/molecules28176353 |
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author | Jabłoński, Mirosław |
author_facet | Jabłoński, Mirosław |
author_sort | Jabłoński, Mirosław |
collection | PubMed |
description | According to Bader’s quantum theory of atoms in molecules (QTAIM), the simultaneous presence of a bond path and the corresponding bond critical point between any two atoms is both a necessary and sufficient condition for the atoms to be bonded to one another. In principle, this means that this pair of atoms should make a stabilizing contribution to the molecular system. However, the multitude of so-called counterintuitive bond paths strongly suggests that this statement is not necessarily true. Particularly ‘troublesome’ are endohedral complexes, in which encapsulation-enforced proximity between the trapped guest (e.g., an atom) and the host’s cage system usually ‘produces’ many counterintuitive bond paths. In the author’s opinion, the best evidence to demonstrate the repulsive nature of the intra-cage guest⋯host interaction is the use of some trapping systems containing small escape channels and then showing that the initially trapped entity spontaneously escapes outside the host’s cage during geometry optimization of the initially built guest@host endohedral complex. For this purpose, a group of 24 Ng@[3 [Formula: see text]]cyclophane (3 [Formula: see text] 6) endohedral complexes is used. As a result, arguments are presented showing that Bader’s topological bond path does not necessarily indicate a stabilizing interaction. |
format | Online Article Text |
id | pubmed-10490063 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-104900632023-09-09 Bader’s Topological Bond Path Does Not Necessarily Indicate Stabilizing Interaction—Proof Studies Based on the Ng@[3(n)]cyclophane Endohedral Complexes Jabłoński, Mirosław Molecules Article According to Bader’s quantum theory of atoms in molecules (QTAIM), the simultaneous presence of a bond path and the corresponding bond critical point between any two atoms is both a necessary and sufficient condition for the atoms to be bonded to one another. In principle, this means that this pair of atoms should make a stabilizing contribution to the molecular system. However, the multitude of so-called counterintuitive bond paths strongly suggests that this statement is not necessarily true. Particularly ‘troublesome’ are endohedral complexes, in which encapsulation-enforced proximity between the trapped guest (e.g., an atom) and the host’s cage system usually ‘produces’ many counterintuitive bond paths. In the author’s opinion, the best evidence to demonstrate the repulsive nature of the intra-cage guest⋯host interaction is the use of some trapping systems containing small escape channels and then showing that the initially trapped entity spontaneously escapes outside the host’s cage during geometry optimization of the initially built guest@host endohedral complex. For this purpose, a group of 24 Ng@[3 [Formula: see text]]cyclophane (3 [Formula: see text] 6) endohedral complexes is used. As a result, arguments are presented showing that Bader’s topological bond path does not necessarily indicate a stabilizing interaction. MDPI 2023-08-30 /pmc/articles/PMC10490063/ /pubmed/37687183 http://dx.doi.org/10.3390/molecules28176353 Text en © 2023 by the author. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Jabłoński, Mirosław Bader’s Topological Bond Path Does Not Necessarily Indicate Stabilizing Interaction—Proof Studies Based on the Ng@[3(n)]cyclophane Endohedral Complexes |
title | Bader’s Topological Bond Path Does Not Necessarily Indicate Stabilizing Interaction—Proof Studies Based on the Ng@[3(n)]cyclophane Endohedral Complexes |
title_full | Bader’s Topological Bond Path Does Not Necessarily Indicate Stabilizing Interaction—Proof Studies Based on the Ng@[3(n)]cyclophane Endohedral Complexes |
title_fullStr | Bader’s Topological Bond Path Does Not Necessarily Indicate Stabilizing Interaction—Proof Studies Based on the Ng@[3(n)]cyclophane Endohedral Complexes |
title_full_unstemmed | Bader’s Topological Bond Path Does Not Necessarily Indicate Stabilizing Interaction—Proof Studies Based on the Ng@[3(n)]cyclophane Endohedral Complexes |
title_short | Bader’s Topological Bond Path Does Not Necessarily Indicate Stabilizing Interaction—Proof Studies Based on the Ng@[3(n)]cyclophane Endohedral Complexes |
title_sort | bader’s topological bond path does not necessarily indicate stabilizing interaction—proof studies based on the ng@[3(n)]cyclophane endohedral complexes |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10490063/ https://www.ncbi.nlm.nih.gov/pubmed/37687183 http://dx.doi.org/10.3390/molecules28176353 |
work_keys_str_mv | AT jabłonskimirosław baderstopologicalbondpathdoesnotnecessarilyindicatestabilizinginteractionproofstudiesbasedontheng3ncyclophaneendohedralcomplexes |