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Shifting Redox Reaction Equilibria on Demand Using an Orthogonal Redox Cofactor

Natural metabolism relies on chemical compartmentalization of two redox cofactors, NAD(+) and NADP(+), to orchestrate life-essential redox reaction directions. However, in whole cells the reliance on these canonical cofactors limits flexible control of redox reaction direction as these reactions are...

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Autores principales: Aspacio, Derek, Zhang, Yulai, Cui, Youtian, King, Edward, Black, William B., Perea, Sean, Luu, Emma, Siegel, Justin B., Li, Han
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cold Spring Harbor Laboratory 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10491207/
https://www.ncbi.nlm.nih.gov/pubmed/37693387
http://dx.doi.org/10.1101/2023.08.29.555398
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author Aspacio, Derek
Zhang, Yulai
Cui, Youtian
King, Edward
Black, William B.
Perea, Sean
Luu, Emma
Siegel, Justin B.
Li, Han
author_facet Aspacio, Derek
Zhang, Yulai
Cui, Youtian
King, Edward
Black, William B.
Perea, Sean
Luu, Emma
Siegel, Justin B.
Li, Han
author_sort Aspacio, Derek
collection PubMed
description Natural metabolism relies on chemical compartmentalization of two redox cofactors, NAD(+) and NADP(+), to orchestrate life-essential redox reaction directions. However, in whole cells the reliance on these canonical cofactors limits flexible control of redox reaction direction as these reactions are permanently tied to catabolism or anabolism. In cell-free systems, NADP(+) is too expensive in large scale. We have previously reported the use of nicotinamide mononucleotide, (NMN(+)) as a low-cost, noncanonical redox cofactor capable of specific electron delivery to diverse chemistries. Here, we present Nox Ortho, an NMNH-specific water-forming oxidase, that completes the toolkit to modulate NMNH/NMN(+) ratio. This work uncovers an enzyme design principle that succeeds in parallel engineering of six butanediol dehydrogenases as NMN(H)-orthogonal biocatalysts consistently with a 10(3) – 10(6) -fold cofactor specificity switch from NAD(P)(+) to NMN(+). We combine these to produce chiral-pure 2,3-butanediol (Bdo) isomers without interference from NAD(H) or NADP(H) in vitro and in E. coli cells. We establish that NMN(H) can be held at a distinct redox ratio on demand, decoupled from both NAD(H) and NADP(H) redox ratios in vitro and in vivo.
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spelling pubmed-104912072023-09-09 Shifting Redox Reaction Equilibria on Demand Using an Orthogonal Redox Cofactor Aspacio, Derek Zhang, Yulai Cui, Youtian King, Edward Black, William B. Perea, Sean Luu, Emma Siegel, Justin B. Li, Han bioRxiv Article Natural metabolism relies on chemical compartmentalization of two redox cofactors, NAD(+) and NADP(+), to orchestrate life-essential redox reaction directions. However, in whole cells the reliance on these canonical cofactors limits flexible control of redox reaction direction as these reactions are permanently tied to catabolism or anabolism. In cell-free systems, NADP(+) is too expensive in large scale. We have previously reported the use of nicotinamide mononucleotide, (NMN(+)) as a low-cost, noncanonical redox cofactor capable of specific electron delivery to diverse chemistries. Here, we present Nox Ortho, an NMNH-specific water-forming oxidase, that completes the toolkit to modulate NMNH/NMN(+) ratio. This work uncovers an enzyme design principle that succeeds in parallel engineering of six butanediol dehydrogenases as NMN(H)-orthogonal biocatalysts consistently with a 10(3) – 10(6) -fold cofactor specificity switch from NAD(P)(+) to NMN(+). We combine these to produce chiral-pure 2,3-butanediol (Bdo) isomers without interference from NAD(H) or NADP(H) in vitro and in E. coli cells. We establish that NMN(H) can be held at a distinct redox ratio on demand, decoupled from both NAD(H) and NADP(H) redox ratios in vitro and in vivo. Cold Spring Harbor Laboratory 2023-08-30 /pmc/articles/PMC10491207/ /pubmed/37693387 http://dx.doi.org/10.1101/2023.08.29.555398 Text en https://creativecommons.org/licenses/by-nc-nd/4.0/This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License (https://creativecommons.org/licenses/by-nc-nd/4.0/) , which allows reusers to copy and distribute the material in any medium or format in unadapted form only, for noncommercial purposes only, and only so long as attribution is given to the creator.
spellingShingle Article
Aspacio, Derek
Zhang, Yulai
Cui, Youtian
King, Edward
Black, William B.
Perea, Sean
Luu, Emma
Siegel, Justin B.
Li, Han
Shifting Redox Reaction Equilibria on Demand Using an Orthogonal Redox Cofactor
title Shifting Redox Reaction Equilibria on Demand Using an Orthogonal Redox Cofactor
title_full Shifting Redox Reaction Equilibria on Demand Using an Orthogonal Redox Cofactor
title_fullStr Shifting Redox Reaction Equilibria on Demand Using an Orthogonal Redox Cofactor
title_full_unstemmed Shifting Redox Reaction Equilibria on Demand Using an Orthogonal Redox Cofactor
title_short Shifting Redox Reaction Equilibria on Demand Using an Orthogonal Redox Cofactor
title_sort shifting redox reaction equilibria on demand using an orthogonal redox cofactor
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10491207/
https://www.ncbi.nlm.nih.gov/pubmed/37693387
http://dx.doi.org/10.1101/2023.08.29.555398
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