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Neural network models for influenza forecasting with associated uncertainty using Web search activity trends

Influenza affects millions of people every year. It causes a considerable amount of medical visits and hospitalisations as well as hundreds of thousands of deaths. Forecasting influenza prevalence with good accuracy can significantly help public health agencies to timely react to seasonal or novel s...

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Detalles Bibliográficos
Autores principales: Morris, Michael, Hayes, Peter, Cox, Ingemar J., Lampos, Vasileios
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10491400/
https://www.ncbi.nlm.nih.gov/pubmed/37639427
http://dx.doi.org/10.1371/journal.pcbi.1011392
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author Morris, Michael
Hayes, Peter
Cox, Ingemar J.
Lampos, Vasileios
author_facet Morris, Michael
Hayes, Peter
Cox, Ingemar J.
Lampos, Vasileios
author_sort Morris, Michael
collection PubMed
description Influenza affects millions of people every year. It causes a considerable amount of medical visits and hospitalisations as well as hundreds of thousands of deaths. Forecasting influenza prevalence with good accuracy can significantly help public health agencies to timely react to seasonal or novel strain epidemics. Although significant progress has been made, influenza forecasting remains a challenging modelling task. In this paper, we propose a methodological framework that improves over the state-of-the-art forecasting accuracy of influenza-like illness (ILI) rates in the United States. We achieve this by using Web search activity time series in conjunction with historical ILI rates as observations for training neural network (NN) architectures. The proposed models incorporate Bayesian layers to produce associated uncertainty intervals to their forecast estimates, positioning themselves as legitimate complementary solutions to more conventional approaches. The best performing NN, referred to as the iterative recurrent neural network (IRNN) architecture, reduces mean absolute error by 10.3% and improves skill by 17.1% on average in nowcasting and forecasting tasks across 4 consecutive flu seasons.
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spelling pubmed-104914002023-09-09 Neural network models for influenza forecasting with associated uncertainty using Web search activity trends Morris, Michael Hayes, Peter Cox, Ingemar J. Lampos, Vasileios PLoS Comput Biol Research Article Influenza affects millions of people every year. It causes a considerable amount of medical visits and hospitalisations as well as hundreds of thousands of deaths. Forecasting influenza prevalence with good accuracy can significantly help public health agencies to timely react to seasonal or novel strain epidemics. Although significant progress has been made, influenza forecasting remains a challenging modelling task. In this paper, we propose a methodological framework that improves over the state-of-the-art forecasting accuracy of influenza-like illness (ILI) rates in the United States. We achieve this by using Web search activity time series in conjunction with historical ILI rates as observations for training neural network (NN) architectures. The proposed models incorporate Bayesian layers to produce associated uncertainty intervals to their forecast estimates, positioning themselves as legitimate complementary solutions to more conventional approaches. The best performing NN, referred to as the iterative recurrent neural network (IRNN) architecture, reduces mean absolute error by 10.3% and improves skill by 17.1% on average in nowcasting and forecasting tasks across 4 consecutive flu seasons. Public Library of Science 2023-08-28 /pmc/articles/PMC10491400/ /pubmed/37639427 http://dx.doi.org/10.1371/journal.pcbi.1011392 Text en © 2023 Morris et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Morris, Michael
Hayes, Peter
Cox, Ingemar J.
Lampos, Vasileios
Neural network models for influenza forecasting with associated uncertainty using Web search activity trends
title Neural network models for influenza forecasting with associated uncertainty using Web search activity trends
title_full Neural network models for influenza forecasting with associated uncertainty using Web search activity trends
title_fullStr Neural network models for influenza forecasting with associated uncertainty using Web search activity trends
title_full_unstemmed Neural network models for influenza forecasting with associated uncertainty using Web search activity trends
title_short Neural network models for influenza forecasting with associated uncertainty using Web search activity trends
title_sort neural network models for influenza forecasting with associated uncertainty using web search activity trends
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10491400/
https://www.ncbi.nlm.nih.gov/pubmed/37639427
http://dx.doi.org/10.1371/journal.pcbi.1011392
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