Cargando…

A review of the machine learning datasets in mammography, their adherence to the FAIR principles and the outlook for the future

The increasing rates of breast cancer, particularly in emerging economies, have led to interest in scalable deep learning-based solutions that improve the accuracy and cost-effectiveness of mammographic screening. However, such tools require large volumes of high-quality training data, which can be...

Descripción completa

Detalles Bibliográficos
Autores principales: Logan, Joe, Kennedy, Paul J., Catchpoole, Daniel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10491669/
https://www.ncbi.nlm.nih.gov/pubmed/37684306
http://dx.doi.org/10.1038/s41597-023-02430-6
_version_ 1785104108565299200
author Logan, Joe
Kennedy, Paul J.
Catchpoole, Daniel
author_facet Logan, Joe
Kennedy, Paul J.
Catchpoole, Daniel
author_sort Logan, Joe
collection PubMed
description The increasing rates of breast cancer, particularly in emerging economies, have led to interest in scalable deep learning-based solutions that improve the accuracy and cost-effectiveness of mammographic screening. However, such tools require large volumes of high-quality training data, which can be challenging to obtain. This paper combines the experience of an AI startup with an analysis of the FAIR principles of the eight available datasets. It demonstrates that the datasets vary considerably, particularly in their interoperability, as each dataset is skewed towards a particular clinical use-case. Additionally, the mix of digital captures and scanned film compounds the problem of variability, along with differences in licensing terms, ease of access, labelling reliability, and file formats. Improving interoperability through adherence to standards such as the BIRADS criteria for labelling and annotation, and a consistent file format, could markedly improve access and use of larger amounts of standardized data. This, in turn, could be increased further by GAN-based synthetic data generation, paving the way towards better health outcomes for breast cancer.
format Online
Article
Text
id pubmed-10491669
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-104916692023-09-10 A review of the machine learning datasets in mammography, their adherence to the FAIR principles and the outlook for the future Logan, Joe Kennedy, Paul J. Catchpoole, Daniel Sci Data Analysis The increasing rates of breast cancer, particularly in emerging economies, have led to interest in scalable deep learning-based solutions that improve the accuracy and cost-effectiveness of mammographic screening. However, such tools require large volumes of high-quality training data, which can be challenging to obtain. This paper combines the experience of an AI startup with an analysis of the FAIR principles of the eight available datasets. It demonstrates that the datasets vary considerably, particularly in their interoperability, as each dataset is skewed towards a particular clinical use-case. Additionally, the mix of digital captures and scanned film compounds the problem of variability, along with differences in licensing terms, ease of access, labelling reliability, and file formats. Improving interoperability through adherence to standards such as the BIRADS criteria for labelling and annotation, and a consistent file format, could markedly improve access and use of larger amounts of standardized data. This, in turn, could be increased further by GAN-based synthetic data generation, paving the way towards better health outcomes for breast cancer. Nature Publishing Group UK 2023-09-08 /pmc/articles/PMC10491669/ /pubmed/37684306 http://dx.doi.org/10.1038/s41597-023-02430-6 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Analysis
Logan, Joe
Kennedy, Paul J.
Catchpoole, Daniel
A review of the machine learning datasets in mammography, their adherence to the FAIR principles and the outlook for the future
title A review of the machine learning datasets in mammography, their adherence to the FAIR principles and the outlook for the future
title_full A review of the machine learning datasets in mammography, their adherence to the FAIR principles and the outlook for the future
title_fullStr A review of the machine learning datasets in mammography, their adherence to the FAIR principles and the outlook for the future
title_full_unstemmed A review of the machine learning datasets in mammography, their adherence to the FAIR principles and the outlook for the future
title_short A review of the machine learning datasets in mammography, their adherence to the FAIR principles and the outlook for the future
title_sort review of the machine learning datasets in mammography, their adherence to the fair principles and the outlook for the future
topic Analysis
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10491669/
https://www.ncbi.nlm.nih.gov/pubmed/37684306
http://dx.doi.org/10.1038/s41597-023-02430-6
work_keys_str_mv AT loganjoe areviewofthemachinelearningdatasetsinmammographytheiradherencetothefairprinciplesandtheoutlookforthefuture
AT kennedypaulj areviewofthemachinelearningdatasetsinmammographytheiradherencetothefairprinciplesandtheoutlookforthefuture
AT catchpooledaniel areviewofthemachinelearningdatasetsinmammographytheiradherencetothefairprinciplesandtheoutlookforthefuture
AT loganjoe reviewofthemachinelearningdatasetsinmammographytheiradherencetothefairprinciplesandtheoutlookforthefuture
AT kennedypaulj reviewofthemachinelearningdatasetsinmammographytheiradherencetothefairprinciplesandtheoutlookforthefuture
AT catchpooledaniel reviewofthemachinelearningdatasetsinmammographytheiradherencetothefairprinciplesandtheoutlookforthefuture