Chromosome level genome assembly of oriental armyworm Mythimna separata

The oriental armyworm, Mythimna separata, is an extremely destructive polyphagous pest with a broad host range that seriously threatens the safety of agricultural production. Here, a high-quality chromosome-level genome was assembled using Illumina, PacBio HiFi long sequencing, and Hi-C scaffolding...

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Autores principales: Xu, Chao, Ji, Jichao, Zhu, Xiangzhen, Huangfu, Ningbo, Xue, Hui, Wang, Li, Zhang, Kaixin, Li, Dongyang, Niu, Lin, Chen, Ran, Gao, Xueke, Luo, Junyu, Cui, Jinjie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Data Descriptor
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10491670/
https://www.ncbi.nlm.nih.gov/pubmed/37684242
http://dx.doi.org/10.1038/s41597-023-02506-3
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author Xu, Chao
Ji, Jichao
Zhu, Xiangzhen
Huangfu, Ningbo
Xue, Hui
Wang, Li
Zhang, Kaixin
Li, Dongyang
Niu, Lin
Chen, Ran
Gao, Xueke
Luo, Junyu
Cui, Jinjie
author_facet Xu, Chao
Ji, Jichao
Zhu, Xiangzhen
Huangfu, Ningbo
Xue, Hui
Wang, Li
Zhang, Kaixin
Li, Dongyang
Niu, Lin
Chen, Ran
Gao, Xueke
Luo, Junyu
Cui, Jinjie
author_sort Xu, Chao
collection PubMed
description The oriental armyworm, Mythimna separata, is an extremely destructive polyphagous pest with a broad host range that seriously threatens the safety of agricultural production. Here, a high-quality chromosome-level genome was assembled using Illumina, PacBio HiFi long sequencing, and Hi-C scaffolding technologies. The genome size was 706.30 Mb with a contig N50 of 22.08 Mb, and 99.2% of the assembled sequences were anchored to 31 chromosomes. In addition, 20,375 protein-coding genes and 258.68 Mb transposable elements were identified. The chromosome-level genome assembly of M. separata provides a significant genetic resource for future studies of this insect and contributes to the development of management strategies.
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spelling pubmed-104916702023-09-10 Chromosome level genome assembly of oriental armyworm Mythimna separata Xu, Chao Ji, Jichao Zhu, Xiangzhen Huangfu, Ningbo Xue, Hui Wang, Li Zhang, Kaixin Li, Dongyang Niu, Lin Chen, Ran Gao, Xueke Luo, Junyu Cui, Jinjie Sci Data Data Descriptor The oriental armyworm, Mythimna separata, is an extremely destructive polyphagous pest with a broad host range that seriously threatens the safety of agricultural production. Here, a high-quality chromosome-level genome was assembled using Illumina, PacBio HiFi long sequencing, and Hi-C scaffolding technologies. The genome size was 706.30 Mb with a contig N50 of 22.08 Mb, and 99.2% of the assembled sequences were anchored to 31 chromosomes. In addition, 20,375 protein-coding genes and 258.68 Mb transposable elements were identified. The chromosome-level genome assembly of M. separata provides a significant genetic resource for future studies of this insect and contributes to the development of management strategies. Nature Publishing Group UK 2023-09-08 /pmc/articles/PMC10491670/ /pubmed/37684242 http://dx.doi.org/10.1038/s41597-023-02506-3 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Data Descriptor
Xu, Chao
Ji, Jichao
Zhu, Xiangzhen
Huangfu, Ningbo
Xue, Hui
Wang, Li
Zhang, Kaixin
Li, Dongyang
Niu, Lin
Chen, Ran
Gao, Xueke
Luo, Junyu
Cui, Jinjie
Chromosome level genome assembly of oriental armyworm Mythimna separata
title Chromosome level genome assembly of oriental armyworm Mythimna separata
title_full Chromosome level genome assembly of oriental armyworm Mythimna separata
title_fullStr Chromosome level genome assembly of oriental armyworm Mythimna separata
title_full_unstemmed Chromosome level genome assembly of oriental armyworm Mythimna separata
title_short Chromosome level genome assembly of oriental armyworm Mythimna separata
title_sort chromosome level genome assembly of oriental armyworm mythimna separata
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10491670/
https://www.ncbi.nlm.nih.gov/pubmed/37684242
http://dx.doi.org/10.1038/s41597-023-02506-3
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