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Providing open imaging data at scale: An EMBL-EBI perspective
Biological imaging is one of the primary tools by which we understand living systems across scales from atoms to organisms. Rapid advances in imaging technology have increased both the spatial and temporal resolutions at which we examine those systems, as well as enabling visualisation of larger tis...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer Berlin Heidelberg
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10492673/ https://www.ncbi.nlm.nih.gov/pubmed/37537341 http://dx.doi.org/10.1007/s00418-023-02216-2 |
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author | Hartley, Matthew Iudin, Andrii Padwardhan, Ardan Sarkans, Ugis Yoldaş, Aybüke Küpcü Kleywegt, Gerard J. |
author_facet | Hartley, Matthew Iudin, Andrii Padwardhan, Ardan Sarkans, Ugis Yoldaş, Aybüke Küpcü Kleywegt, Gerard J. |
author_sort | Hartley, Matthew |
collection | PubMed |
description | Biological imaging is one of the primary tools by which we understand living systems across scales from atoms to organisms. Rapid advances in imaging technology have increased both the spatial and temporal resolutions at which we examine those systems, as well as enabling visualisation of larger tissue volumes. These advances have huge potential but also generate ever increasing amounts of imaging data that must be stored and analysed. Public image repositories provide a critical scientific service through open data provision, supporting reproducibility of scientific results, access to reference imaging datasets and reuse of data for new scientific discovery and acceleration of image analysis methods development. The scale and scope of imaging data provides both challenges and opportunities for open sharing of image data. In this article, we provide a perspective influenced by decades of provision of open data resources for biological information, suggesting areas to focus on and a path towards global interoperability. |
format | Online Article Text |
id | pubmed-10492673 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Springer Berlin Heidelberg |
record_format | MEDLINE/PubMed |
spelling | pubmed-104926732023-09-11 Providing open imaging data at scale: An EMBL-EBI perspective Hartley, Matthew Iudin, Andrii Padwardhan, Ardan Sarkans, Ugis Yoldaş, Aybüke Küpcü Kleywegt, Gerard J. Histochem Cell Biol Original Paper Biological imaging is one of the primary tools by which we understand living systems across scales from atoms to organisms. Rapid advances in imaging technology have increased both the spatial and temporal resolutions at which we examine those systems, as well as enabling visualisation of larger tissue volumes. These advances have huge potential but also generate ever increasing amounts of imaging data that must be stored and analysed. Public image repositories provide a critical scientific service through open data provision, supporting reproducibility of scientific results, access to reference imaging datasets and reuse of data for new scientific discovery and acceleration of image analysis methods development. The scale and scope of imaging data provides both challenges and opportunities for open sharing of image data. In this article, we provide a perspective influenced by decades of provision of open data resources for biological information, suggesting areas to focus on and a path towards global interoperability. Springer Berlin Heidelberg 2023-08-03 2023 /pmc/articles/PMC10492673/ /pubmed/37537341 http://dx.doi.org/10.1007/s00418-023-02216-2 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Original Paper Hartley, Matthew Iudin, Andrii Padwardhan, Ardan Sarkans, Ugis Yoldaş, Aybüke Küpcü Kleywegt, Gerard J. Providing open imaging data at scale: An EMBL-EBI perspective |
title | Providing open imaging data at scale: An EMBL-EBI perspective |
title_full | Providing open imaging data at scale: An EMBL-EBI perspective |
title_fullStr | Providing open imaging data at scale: An EMBL-EBI perspective |
title_full_unstemmed | Providing open imaging data at scale: An EMBL-EBI perspective |
title_short | Providing open imaging data at scale: An EMBL-EBI perspective |
title_sort | providing open imaging data at scale: an embl-ebi perspective |
topic | Original Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10492673/ https://www.ncbi.nlm.nih.gov/pubmed/37537341 http://dx.doi.org/10.1007/s00418-023-02216-2 |
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