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Structure of a putative immature form of a Rieske-type iron-sulfur protein in complex with zinc chloride

Iron-sulfur clusters are prosthetic groups of proteins involved in various biological processes. However, details of the immature state of the iron-sulfur cluster into proteins have not yet been elucidated. We report here the first structural analysis of the Zn-containing form of a Rieske-type iron-...

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Autores principales: Tsutsumi, Erika, Niwa, Satomi, Takeda, Ryota, Sakamoto, Natsuki, Okatsu, Kei, Fukai, Shuya, Ago, Hideo, Nagao, Satoshi, Sekiguchi, Hiroshi, Takeda, Kazuki
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10492824/
https://www.ncbi.nlm.nih.gov/pubmed/37689761
http://dx.doi.org/10.1038/s42004-023-01000-6
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author Tsutsumi, Erika
Niwa, Satomi
Takeda, Ryota
Sakamoto, Natsuki
Okatsu, Kei
Fukai, Shuya
Ago, Hideo
Nagao, Satoshi
Sekiguchi, Hiroshi
Takeda, Kazuki
author_facet Tsutsumi, Erika
Niwa, Satomi
Takeda, Ryota
Sakamoto, Natsuki
Okatsu, Kei
Fukai, Shuya
Ago, Hideo
Nagao, Satoshi
Sekiguchi, Hiroshi
Takeda, Kazuki
author_sort Tsutsumi, Erika
collection PubMed
description Iron-sulfur clusters are prosthetic groups of proteins involved in various biological processes. However, details of the immature state of the iron-sulfur cluster into proteins have not yet been elucidated. We report here the first structural analysis of the Zn-containing form of a Rieske-type iron-sulfur protein, PetA, from Thermochromatium tepidum (TtPetA) by X-ray crystallography and small-angle X-ray scattering analysis. The Zn-containing form of TtPetA was indicated to be a dimer in solution. The zinc ion adopts a regular tetra-coordination with two chloride ions and two cysteine residues. Only a histidine residue in the cluster-binding site exhibited a conformational difference from the [2Fe-2S] containing form. The Zn-containing structure indicates that the conformation of the cluster binding site is already constructed and stabilized before insertion of [2Fe-2S]. The binding mode of ZnCl(2), similar to the [2Fe-2S] cluster, suggests that the zinc ions might be involved in the insertion of the [2Fe-2S] cluster.
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spelling pubmed-104928242023-09-11 Structure of a putative immature form of a Rieske-type iron-sulfur protein in complex with zinc chloride Tsutsumi, Erika Niwa, Satomi Takeda, Ryota Sakamoto, Natsuki Okatsu, Kei Fukai, Shuya Ago, Hideo Nagao, Satoshi Sekiguchi, Hiroshi Takeda, Kazuki Commun Chem Article Iron-sulfur clusters are prosthetic groups of proteins involved in various biological processes. However, details of the immature state of the iron-sulfur cluster into proteins have not yet been elucidated. We report here the first structural analysis of the Zn-containing form of a Rieske-type iron-sulfur protein, PetA, from Thermochromatium tepidum (TtPetA) by X-ray crystallography and small-angle X-ray scattering analysis. The Zn-containing form of TtPetA was indicated to be a dimer in solution. The zinc ion adopts a regular tetra-coordination with two chloride ions and two cysteine residues. Only a histidine residue in the cluster-binding site exhibited a conformational difference from the [2Fe-2S] containing form. The Zn-containing structure indicates that the conformation of the cluster binding site is already constructed and stabilized before insertion of [2Fe-2S]. The binding mode of ZnCl(2), similar to the [2Fe-2S] cluster, suggests that the zinc ions might be involved in the insertion of the [2Fe-2S] cluster. Nature Publishing Group UK 2023-09-09 /pmc/articles/PMC10492824/ /pubmed/37689761 http://dx.doi.org/10.1038/s42004-023-01000-6 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Tsutsumi, Erika
Niwa, Satomi
Takeda, Ryota
Sakamoto, Natsuki
Okatsu, Kei
Fukai, Shuya
Ago, Hideo
Nagao, Satoshi
Sekiguchi, Hiroshi
Takeda, Kazuki
Structure of a putative immature form of a Rieske-type iron-sulfur protein in complex with zinc chloride
title Structure of a putative immature form of a Rieske-type iron-sulfur protein in complex with zinc chloride
title_full Structure of a putative immature form of a Rieske-type iron-sulfur protein in complex with zinc chloride
title_fullStr Structure of a putative immature form of a Rieske-type iron-sulfur protein in complex with zinc chloride
title_full_unstemmed Structure of a putative immature form of a Rieske-type iron-sulfur protein in complex with zinc chloride
title_short Structure of a putative immature form of a Rieske-type iron-sulfur protein in complex with zinc chloride
title_sort structure of a putative immature form of a rieske-type iron-sulfur protein in complex with zinc chloride
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10492824/
https://www.ncbi.nlm.nih.gov/pubmed/37689761
http://dx.doi.org/10.1038/s42004-023-01000-6
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