Cargando…
Integrative analysis of lysine acetylation-related genes and identification of a novel prognostic model for oral squamous cell carcinoma
Introduction: Oral squamous cell carcinoma (OSCC), which accounts for a high proportion of oral cancers, is characterized by high aggressiveness and rising incidence. Lysine acetylation is associated with cancer pathogenesis. Lysine acetylation-related genes (LARGs) are therapeutic targets and poten...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10495994/ https://www.ncbi.nlm.nih.gov/pubmed/37705968 http://dx.doi.org/10.3389/fmolb.2023.1185832 |
_version_ | 1785105013578661888 |
---|---|
author | Deng, Shi-Zhou Wu, Xuechen Tang, Jiezhang Dai, Lin Cheng, Bo |
author_facet | Deng, Shi-Zhou Wu, Xuechen Tang, Jiezhang Dai, Lin Cheng, Bo |
author_sort | Deng, Shi-Zhou |
collection | PubMed |
description | Introduction: Oral squamous cell carcinoma (OSCC), which accounts for a high proportion of oral cancers, is characterized by high aggressiveness and rising incidence. Lysine acetylation is associated with cancer pathogenesis. Lysine acetylation-related genes (LARGs) are therapeutic targets and potential prognostic indicators in various tumors, including oral squamous cell carcinoma. However, systematic bioinformatics analysis of the Lysine acetylation-related genes in Oral squamous cell carcinoma is still unexplored. Methods: We analyzed the expression of 33 Lysine acetylation-related genes in oral squamous cell carcinoma and the effects of their somatic mutations on oral squamous cell carcinoma prognosis. Consistent clustering analysis identified two lysine acetylation patterns and the differences between the two patterns were further evaluated. Least absolute shrinkage and selection operator (LASSO) regression analysis was used to develop a lysine acetylation-related prognostic model using TCGA oral squamous cell carcinoma datasets, which was then validated using gene expression omnibus (GEO) dataset GSE41613. Results: Patients with lower risk scores had better prognoses, in both the overall cohort and within the subgroups These patients also had “hot” immune microenvironments and were more sensitive to immunotherapy. Disscussion: Our findings offer a new model for classifying oral squamous cell carcinoma and determining its prognosis and offer novel insights into oral squamous cell carcinoma diagnosis and treatment. |
format | Online Article Text |
id | pubmed-10495994 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-104959942023-09-13 Integrative analysis of lysine acetylation-related genes and identification of a novel prognostic model for oral squamous cell carcinoma Deng, Shi-Zhou Wu, Xuechen Tang, Jiezhang Dai, Lin Cheng, Bo Front Mol Biosci Molecular Biosciences Introduction: Oral squamous cell carcinoma (OSCC), which accounts for a high proportion of oral cancers, is characterized by high aggressiveness and rising incidence. Lysine acetylation is associated with cancer pathogenesis. Lysine acetylation-related genes (LARGs) are therapeutic targets and potential prognostic indicators in various tumors, including oral squamous cell carcinoma. However, systematic bioinformatics analysis of the Lysine acetylation-related genes in Oral squamous cell carcinoma is still unexplored. Methods: We analyzed the expression of 33 Lysine acetylation-related genes in oral squamous cell carcinoma and the effects of their somatic mutations on oral squamous cell carcinoma prognosis. Consistent clustering analysis identified two lysine acetylation patterns and the differences between the two patterns were further evaluated. Least absolute shrinkage and selection operator (LASSO) regression analysis was used to develop a lysine acetylation-related prognostic model using TCGA oral squamous cell carcinoma datasets, which was then validated using gene expression omnibus (GEO) dataset GSE41613. Results: Patients with lower risk scores had better prognoses, in both the overall cohort and within the subgroups These patients also had “hot” immune microenvironments and were more sensitive to immunotherapy. Disscussion: Our findings offer a new model for classifying oral squamous cell carcinoma and determining its prognosis and offer novel insights into oral squamous cell carcinoma diagnosis and treatment. Frontiers Media S.A. 2023-08-29 /pmc/articles/PMC10495994/ /pubmed/37705968 http://dx.doi.org/10.3389/fmolb.2023.1185832 Text en Copyright © 2023 Deng, Wu, Tang, Dai and Cheng. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Molecular Biosciences Deng, Shi-Zhou Wu, Xuechen Tang, Jiezhang Dai, Lin Cheng, Bo Integrative analysis of lysine acetylation-related genes and identification of a novel prognostic model for oral squamous cell carcinoma |
title | Integrative analysis of lysine acetylation-related genes and identification of a novel prognostic model for oral squamous cell carcinoma |
title_full | Integrative analysis of lysine acetylation-related genes and identification of a novel prognostic model for oral squamous cell carcinoma |
title_fullStr | Integrative analysis of lysine acetylation-related genes and identification of a novel prognostic model for oral squamous cell carcinoma |
title_full_unstemmed | Integrative analysis of lysine acetylation-related genes and identification of a novel prognostic model for oral squamous cell carcinoma |
title_short | Integrative analysis of lysine acetylation-related genes and identification of a novel prognostic model for oral squamous cell carcinoma |
title_sort | integrative analysis of lysine acetylation-related genes and identification of a novel prognostic model for oral squamous cell carcinoma |
topic | Molecular Biosciences |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10495994/ https://www.ncbi.nlm.nih.gov/pubmed/37705968 http://dx.doi.org/10.3389/fmolb.2023.1185832 |
work_keys_str_mv | AT dengshizhou integrativeanalysisoflysineacetylationrelatedgenesandidentificationofanovelprognosticmodelfororalsquamouscellcarcinoma AT wuxuechen integrativeanalysisoflysineacetylationrelatedgenesandidentificationofanovelprognosticmodelfororalsquamouscellcarcinoma AT tangjiezhang integrativeanalysisoflysineacetylationrelatedgenesandidentificationofanovelprognosticmodelfororalsquamouscellcarcinoma AT dailin integrativeanalysisoflysineacetylationrelatedgenesandidentificationofanovelprognosticmodelfororalsquamouscellcarcinoma AT chengbo integrativeanalysisoflysineacetylationrelatedgenesandidentificationofanovelprognosticmodelfororalsquamouscellcarcinoma |