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Chromosome‐level Asian elephant genome assembly and comparative genomics of long‐lived mammals reveal the common substitutions for cancer resistance
The naked mole rat (Heterocephalus glaber), bats (e.g., genus Myotis), and elephants (family Elephantidae) are known as long‐lived mammals and are assumed to be excellent cancer antagonists. However, whether there are common genetic changes underpinning cancer resistance in these long‐lived species...
Autores principales: | , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10497851/ https://www.ncbi.nlm.nih.gov/pubmed/37395176 http://dx.doi.org/10.1111/acel.13917 |
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author | Li, Xuanjing Wang, Pengcheng Pan, Qi Liu, Gaoming Liu, Weiqiang Omotoso, Olatunde Du, Juan Li, Zihao Yu, Yang Huang, Yun Zhu, Pingfen Li, Meng Zhou, Xuming |
author_facet | Li, Xuanjing Wang, Pengcheng Pan, Qi Liu, Gaoming Liu, Weiqiang Omotoso, Olatunde Du, Juan Li, Zihao Yu, Yang Huang, Yun Zhu, Pingfen Li, Meng Zhou, Xuming |
author_sort | Li, Xuanjing |
collection | PubMed |
description | The naked mole rat (Heterocephalus glaber), bats (e.g., genus Myotis), and elephants (family Elephantidae) are known as long‐lived mammals and are assumed to be excellent cancer antagonists. However, whether there are common genetic changes underpinning cancer resistance in these long‐lived species is yet to be fully established. Here, we newly generated a high‐quality chromosome‐level Asian elephant (Elephas maximus) genome and identified that the expanded gene families in elephants are involved in Ras‐associated and base excision repair pathways. Moreover, we performed comparative genomic analyses of 12 mammals and examined genes with signatures of positive selection in elephants, naked mole rat, and greater horseshoe bat. Residues at positively selected sites of CDR2L and ALDH6A1 in these long‐lived mammals enhanced the inhibition of tumor cell migration compared to those in short‐lived relatives. Overall, our study provides a new genome resource and a preliminary survey of common genetic changes in long‐lived mammals. |
format | Online Article Text |
id | pubmed-10497851 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-104978512023-09-14 Chromosome‐level Asian elephant genome assembly and comparative genomics of long‐lived mammals reveal the common substitutions for cancer resistance Li, Xuanjing Wang, Pengcheng Pan, Qi Liu, Gaoming Liu, Weiqiang Omotoso, Olatunde Du, Juan Li, Zihao Yu, Yang Huang, Yun Zhu, Pingfen Li, Meng Zhou, Xuming Aging Cell Research Articles The naked mole rat (Heterocephalus glaber), bats (e.g., genus Myotis), and elephants (family Elephantidae) are known as long‐lived mammals and are assumed to be excellent cancer antagonists. However, whether there are common genetic changes underpinning cancer resistance in these long‐lived species is yet to be fully established. Here, we newly generated a high‐quality chromosome‐level Asian elephant (Elephas maximus) genome and identified that the expanded gene families in elephants are involved in Ras‐associated and base excision repair pathways. Moreover, we performed comparative genomic analyses of 12 mammals and examined genes with signatures of positive selection in elephants, naked mole rat, and greater horseshoe bat. Residues at positively selected sites of CDR2L and ALDH6A1 in these long‐lived mammals enhanced the inhibition of tumor cell migration compared to those in short‐lived relatives. Overall, our study provides a new genome resource and a preliminary survey of common genetic changes in long‐lived mammals. John Wiley and Sons Inc. 2023-07-03 /pmc/articles/PMC10497851/ /pubmed/37395176 http://dx.doi.org/10.1111/acel.13917 Text en © 2023 The Authors. Aging Cell published by Anatomical Society and John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Articles Li, Xuanjing Wang, Pengcheng Pan, Qi Liu, Gaoming Liu, Weiqiang Omotoso, Olatunde Du, Juan Li, Zihao Yu, Yang Huang, Yun Zhu, Pingfen Li, Meng Zhou, Xuming Chromosome‐level Asian elephant genome assembly and comparative genomics of long‐lived mammals reveal the common substitutions for cancer resistance |
title | Chromosome‐level Asian elephant genome assembly and comparative genomics of long‐lived mammals reveal the common substitutions for cancer resistance |
title_full | Chromosome‐level Asian elephant genome assembly and comparative genomics of long‐lived mammals reveal the common substitutions for cancer resistance |
title_fullStr | Chromosome‐level Asian elephant genome assembly and comparative genomics of long‐lived mammals reveal the common substitutions for cancer resistance |
title_full_unstemmed | Chromosome‐level Asian elephant genome assembly and comparative genomics of long‐lived mammals reveal the common substitutions for cancer resistance |
title_short | Chromosome‐level Asian elephant genome assembly and comparative genomics of long‐lived mammals reveal the common substitutions for cancer resistance |
title_sort | chromosome‐level asian elephant genome assembly and comparative genomics of long‐lived mammals reveal the common substitutions for cancer resistance |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10497851/ https://www.ncbi.nlm.nih.gov/pubmed/37395176 http://dx.doi.org/10.1111/acel.13917 |
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