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Chromosome‐level Asian elephant genome assembly and comparative genomics of long‐lived mammals reveal the common substitutions for cancer resistance

The naked mole rat (Heterocephalus glaber), bats (e.g., genus Myotis), and elephants (family Elephantidae) are known as long‐lived mammals and are assumed to be excellent cancer antagonists. However, whether there are common genetic changes underpinning cancer resistance in these long‐lived species...

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Autores principales: Li, Xuanjing, Wang, Pengcheng, Pan, Qi, Liu, Gaoming, Liu, Weiqiang, Omotoso, Olatunde, Du, Juan, Li, Zihao, Yu, Yang, Huang, Yun, Zhu, Pingfen, Li, Meng, Zhou, Xuming
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10497851/
https://www.ncbi.nlm.nih.gov/pubmed/37395176
http://dx.doi.org/10.1111/acel.13917
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author Li, Xuanjing
Wang, Pengcheng
Pan, Qi
Liu, Gaoming
Liu, Weiqiang
Omotoso, Olatunde
Du, Juan
Li, Zihao
Yu, Yang
Huang, Yun
Zhu, Pingfen
Li, Meng
Zhou, Xuming
author_facet Li, Xuanjing
Wang, Pengcheng
Pan, Qi
Liu, Gaoming
Liu, Weiqiang
Omotoso, Olatunde
Du, Juan
Li, Zihao
Yu, Yang
Huang, Yun
Zhu, Pingfen
Li, Meng
Zhou, Xuming
author_sort Li, Xuanjing
collection PubMed
description The naked mole rat (Heterocephalus glaber), bats (e.g., genus Myotis), and elephants (family Elephantidae) are known as long‐lived mammals and are assumed to be excellent cancer antagonists. However, whether there are common genetic changes underpinning cancer resistance in these long‐lived species is yet to be fully established. Here, we newly generated a high‐quality chromosome‐level Asian elephant (Elephas maximus) genome and identified that the expanded gene families in elephants are involved in Ras‐associated and base excision repair pathways. Moreover, we performed comparative genomic analyses of 12 mammals and examined genes with signatures of positive selection in elephants, naked mole rat, and greater horseshoe bat. Residues at positively selected sites of CDR2L and ALDH6A1 in these long‐lived mammals enhanced the inhibition of tumor cell migration compared to those in short‐lived relatives. Overall, our study provides a new genome resource and a preliminary survey of common genetic changes in long‐lived mammals.
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spelling pubmed-104978512023-09-14 Chromosome‐level Asian elephant genome assembly and comparative genomics of long‐lived mammals reveal the common substitutions for cancer resistance Li, Xuanjing Wang, Pengcheng Pan, Qi Liu, Gaoming Liu, Weiqiang Omotoso, Olatunde Du, Juan Li, Zihao Yu, Yang Huang, Yun Zhu, Pingfen Li, Meng Zhou, Xuming Aging Cell Research Articles The naked mole rat (Heterocephalus glaber), bats (e.g., genus Myotis), and elephants (family Elephantidae) are known as long‐lived mammals and are assumed to be excellent cancer antagonists. However, whether there are common genetic changes underpinning cancer resistance in these long‐lived species is yet to be fully established. Here, we newly generated a high‐quality chromosome‐level Asian elephant (Elephas maximus) genome and identified that the expanded gene families in elephants are involved in Ras‐associated and base excision repair pathways. Moreover, we performed comparative genomic analyses of 12 mammals and examined genes with signatures of positive selection in elephants, naked mole rat, and greater horseshoe bat. Residues at positively selected sites of CDR2L and ALDH6A1 in these long‐lived mammals enhanced the inhibition of tumor cell migration compared to those in short‐lived relatives. Overall, our study provides a new genome resource and a preliminary survey of common genetic changes in long‐lived mammals. John Wiley and Sons Inc. 2023-07-03 /pmc/articles/PMC10497851/ /pubmed/37395176 http://dx.doi.org/10.1111/acel.13917 Text en © 2023 The Authors. Aging Cell published by Anatomical Society and John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Li, Xuanjing
Wang, Pengcheng
Pan, Qi
Liu, Gaoming
Liu, Weiqiang
Omotoso, Olatunde
Du, Juan
Li, Zihao
Yu, Yang
Huang, Yun
Zhu, Pingfen
Li, Meng
Zhou, Xuming
Chromosome‐level Asian elephant genome assembly and comparative genomics of long‐lived mammals reveal the common substitutions for cancer resistance
title Chromosome‐level Asian elephant genome assembly and comparative genomics of long‐lived mammals reveal the common substitutions for cancer resistance
title_full Chromosome‐level Asian elephant genome assembly and comparative genomics of long‐lived mammals reveal the common substitutions for cancer resistance
title_fullStr Chromosome‐level Asian elephant genome assembly and comparative genomics of long‐lived mammals reveal the common substitutions for cancer resistance
title_full_unstemmed Chromosome‐level Asian elephant genome assembly and comparative genomics of long‐lived mammals reveal the common substitutions for cancer resistance
title_short Chromosome‐level Asian elephant genome assembly and comparative genomics of long‐lived mammals reveal the common substitutions for cancer resistance
title_sort chromosome‐level asian elephant genome assembly and comparative genomics of long‐lived mammals reveal the common substitutions for cancer resistance
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10497851/
https://www.ncbi.nlm.nih.gov/pubmed/37395176
http://dx.doi.org/10.1111/acel.13917
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