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Comparative genomic and transcriptomic analyses of African swine fever virus strains

African swine fever (ASF) is the most devastating disease caused by the African swine fever virus (ASFV), impacting the pig industry worldwide and threatening food security and biodiversity. Although two vaccines have been approved in Vietnam to combat ASFV, the complexity of the virus, with its num...

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Autores principales: Lu, Peng, Zhou, Jiaqiao, Wei, Sibo, Takada, Konosuke, Masutani, Hayato, Okuda, Suguru, Okamoto, Ken, Suzuki, Michio, Kitamura, Tomoya, Masujin, Kentaro, Kokuho, Takehiro, Itoh, Hideaki, Nagata, Koji
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Research Network of Computational and Structural Biotechnology 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10497913/
https://www.ncbi.nlm.nih.gov/pubmed/37711186
http://dx.doi.org/10.1016/j.csbj.2023.08.028
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author Lu, Peng
Zhou, Jiaqiao
Wei, Sibo
Takada, Konosuke
Masutani, Hayato
Okuda, Suguru
Okamoto, Ken
Suzuki, Michio
Kitamura, Tomoya
Masujin, Kentaro
Kokuho, Takehiro
Itoh, Hideaki
Nagata, Koji
author_facet Lu, Peng
Zhou, Jiaqiao
Wei, Sibo
Takada, Konosuke
Masutani, Hayato
Okuda, Suguru
Okamoto, Ken
Suzuki, Michio
Kitamura, Tomoya
Masujin, Kentaro
Kokuho, Takehiro
Itoh, Hideaki
Nagata, Koji
author_sort Lu, Peng
collection PubMed
description African swine fever (ASF) is the most devastating disease caused by the African swine fever virus (ASFV), impacting the pig industry worldwide and threatening food security and biodiversity. Although two vaccines have been approved in Vietnam to combat ASFV, the complexity of the virus, with its numerous open reading frames (ORFs), necessitates a more diverse vaccine strategy. Therefore, we focused on identifying and investigating the potential vaccine targets for developing a broad-spectrum defense against the virus. This study collected the genomic and/or transcriptomic data of different ASFV strains, specifically from in vitro studies, focusing on comparisons between genotypes I, II, and X, from the National Center for Biotechnology Information (NCBI) database. The comprehensive analysis of the genomic and transcriptomic differences between high- and low-virulence strains revealed six early genes, 13 late genes, and six short genes as potentially essential ORFs associated with high-virulence. In addition, many other ORFs (e.g., 14 multigene family members) are worth investigating. The results of this study provided candidate ORFs for developing ASF vaccines and therapies.
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spelling pubmed-104979132023-09-14 Comparative genomic and transcriptomic analyses of African swine fever virus strains Lu, Peng Zhou, Jiaqiao Wei, Sibo Takada, Konosuke Masutani, Hayato Okuda, Suguru Okamoto, Ken Suzuki, Michio Kitamura, Tomoya Masujin, Kentaro Kokuho, Takehiro Itoh, Hideaki Nagata, Koji Comput Struct Biotechnol J Research Article African swine fever (ASF) is the most devastating disease caused by the African swine fever virus (ASFV), impacting the pig industry worldwide and threatening food security and biodiversity. Although two vaccines have been approved in Vietnam to combat ASFV, the complexity of the virus, with its numerous open reading frames (ORFs), necessitates a more diverse vaccine strategy. Therefore, we focused on identifying and investigating the potential vaccine targets for developing a broad-spectrum defense against the virus. This study collected the genomic and/or transcriptomic data of different ASFV strains, specifically from in vitro studies, focusing on comparisons between genotypes I, II, and X, from the National Center for Biotechnology Information (NCBI) database. The comprehensive analysis of the genomic and transcriptomic differences between high- and low-virulence strains revealed six early genes, 13 late genes, and six short genes as potentially essential ORFs associated with high-virulence. In addition, many other ORFs (e.g., 14 multigene family members) are worth investigating. The results of this study provided candidate ORFs for developing ASF vaccines and therapies. Research Network of Computational and Structural Biotechnology 2023-08-29 /pmc/articles/PMC10497913/ /pubmed/37711186 http://dx.doi.org/10.1016/j.csbj.2023.08.028 Text en © 2023 The Authors https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Research Article
Lu, Peng
Zhou, Jiaqiao
Wei, Sibo
Takada, Konosuke
Masutani, Hayato
Okuda, Suguru
Okamoto, Ken
Suzuki, Michio
Kitamura, Tomoya
Masujin, Kentaro
Kokuho, Takehiro
Itoh, Hideaki
Nagata, Koji
Comparative genomic and transcriptomic analyses of African swine fever virus strains
title Comparative genomic and transcriptomic analyses of African swine fever virus strains
title_full Comparative genomic and transcriptomic analyses of African swine fever virus strains
title_fullStr Comparative genomic and transcriptomic analyses of African swine fever virus strains
title_full_unstemmed Comparative genomic and transcriptomic analyses of African swine fever virus strains
title_short Comparative genomic and transcriptomic analyses of African swine fever virus strains
title_sort comparative genomic and transcriptomic analyses of african swine fever virus strains
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10497913/
https://www.ncbi.nlm.nih.gov/pubmed/37711186
http://dx.doi.org/10.1016/j.csbj.2023.08.028
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