Genome assembly and annotation of the Sharp-nosed Pit Viper Deinagkistrodon acutus based on next-generation sequencing data

The study of the currently known >3,000 species of snakes can provide valuable insights into the evolution of their genomes. Deinagkistrodon acutus, also known as Sharp-nosed Pit Viper, one hundred-pacer viper or five-pacer viper, is a venomous snake with significant economic, medicinal and scien...

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Autores principales: Wang, Xinyu, Liu, Lirong, Zhu, Wenbiao, Wang, Shiqing, Shi, Minhui, Yang, Shuhui, Lu, Haorong, Cao, Jun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: GigaScience Press 2023
Materias:
Data Release
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10498098/
https://www.ncbi.nlm.nih.gov/pubmed/37711277
http://dx.doi.org/10.46471/gigabyte.88
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author Wang, Xinyu
Liu, Lirong
Zhu, Wenbiao
Wang, Shiqing
Shi, Minhui
Yang, Shuhui
Lu, Haorong
Cao, Jun
author_facet Wang, Xinyu
Liu, Lirong
Zhu, Wenbiao
Wang, Shiqing
Shi, Minhui
Yang, Shuhui
Lu, Haorong
Cao, Jun
author_sort Wang, Xinyu
collection PubMed
description The study of the currently known >3,000 species of snakes can provide valuable insights into the evolution of their genomes. Deinagkistrodon acutus, also known as Sharp-nosed Pit Viper, one hundred-pacer viper or five-pacer viper, is a venomous snake with significant economic, medicinal and scientific importance. Widely distributed in southeastern China and South-East Asia, D. acutus has been primarily studied for its venom. Here, we employed next-generation sequencing to assemble and annotate a highly continuous genome of D. acutus. The genome size is 1.46 Gb; its scaffold N50 length is 6.21 Mb, the repeat content is 42.81%, and 24,402 functional genes were annotated. This study helps to further understand and utilize D. acutus and its venom at the genetic level.
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spelling pubmed-104980982023-09-14 Genome assembly and annotation of the Sharp-nosed Pit Viper Deinagkistrodon acutus based on next-generation sequencing data Wang, Xinyu Liu, Lirong Zhu, Wenbiao Wang, Shiqing Shi, Minhui Yang, Shuhui Lu, Haorong Cao, Jun GigaByte Data Release The study of the currently known >3,000 species of snakes can provide valuable insights into the evolution of their genomes. Deinagkistrodon acutus, also known as Sharp-nosed Pit Viper, one hundred-pacer viper or five-pacer viper, is a venomous snake with significant economic, medicinal and scientific importance. Widely distributed in southeastern China and South-East Asia, D. acutus has been primarily studied for its venom. Here, we employed next-generation sequencing to assemble and annotate a highly continuous genome of D. acutus. The genome size is 1.46 Gb; its scaffold N50 length is 6.21 Mb, the repeat content is 42.81%, and 24,402 functional genes were annotated. This study helps to further understand and utilize D. acutus and its venom at the genetic level. GigaScience Press 2023-09-04 /pmc/articles/PMC10498098/ /pubmed/37711277 http://dx.doi.org/10.46471/gigabyte.88 Text en © The Author(s) 2023. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Data Release
Wang, Xinyu
Liu, Lirong
Zhu, Wenbiao
Wang, Shiqing
Shi, Minhui
Yang, Shuhui
Lu, Haorong
Cao, Jun
Genome assembly and annotation of the Sharp-nosed Pit Viper Deinagkistrodon acutus based on next-generation sequencing data
title Genome assembly and annotation of the Sharp-nosed Pit Viper Deinagkistrodon acutus based on next-generation sequencing data
title_full Genome assembly and annotation of the Sharp-nosed Pit Viper Deinagkistrodon acutus based on next-generation sequencing data
title_fullStr Genome assembly and annotation of the Sharp-nosed Pit Viper Deinagkistrodon acutus based on next-generation sequencing data
title_full_unstemmed Genome assembly and annotation of the Sharp-nosed Pit Viper Deinagkistrodon acutus based on next-generation sequencing data
title_short Genome assembly and annotation of the Sharp-nosed Pit Viper Deinagkistrodon acutus based on next-generation sequencing data
title_sort genome assembly and annotation of the sharp-nosed pit viper deinagkistrodon acutus based on next-generation sequencing data
topic Data Release
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10498098/
https://www.ncbi.nlm.nih.gov/pubmed/37711277
http://dx.doi.org/10.46471/gigabyte.88
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