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Enhanced Pulley Effect for Translocation: The Interplay of Electrostatic and Hydrodynamic Forces
[Image: see text] Solid-state nanopore sensors remain a promising solution to the rising global demand for genome sequencing. These single-molecule sensing technologies require single-file translocation for high resolution and accurate detection. In a previous publication, we discovered a hairpin un...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10498446/ https://www.ncbi.nlm.nih.gov/pubmed/37417981 http://dx.doi.org/10.1021/acs.biomac.3c00473 |
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author | Afrasiabian, Navid Wei, Matthew Denniston, Colin |
author_facet | Afrasiabian, Navid Wei, Matthew Denniston, Colin |
author_sort | Afrasiabian, Navid |
collection | PubMed |
description | [Image: see text] Solid-state nanopore sensors remain a promising solution to the rising global demand for genome sequencing. These single-molecule sensing technologies require single-file translocation for high resolution and accurate detection. In a previous publication, we discovered a hairpin unraveling mechanism, namely, the pulley effect, in a pressure-driven translocation system. In this paper, we further investigate the pulley effect in the presence of pressure-driven fluid flow and an opposing force provided by an electrostatic field as an approach to increase single-file capture probability. A hydrodynamic flow is used to move the polymer forward, and two oppositely charged electrostatic square loops are used to create an opposing force. By optimizing the balance between forces, we show that the single-file capture can be amplified from about 50% to almost 95%. The force location, force strength, and flow rate are used as the optimizing variables. |
format | Online Article Text |
id | pubmed-10498446 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-104984462023-09-14 Enhanced Pulley Effect for Translocation: The Interplay of Electrostatic and Hydrodynamic Forces Afrasiabian, Navid Wei, Matthew Denniston, Colin Biomacromolecules [Image: see text] Solid-state nanopore sensors remain a promising solution to the rising global demand for genome sequencing. These single-molecule sensing technologies require single-file translocation for high resolution and accurate detection. In a previous publication, we discovered a hairpin unraveling mechanism, namely, the pulley effect, in a pressure-driven translocation system. In this paper, we further investigate the pulley effect in the presence of pressure-driven fluid flow and an opposing force provided by an electrostatic field as an approach to increase single-file capture probability. A hydrodynamic flow is used to move the polymer forward, and two oppositely charged electrostatic square loops are used to create an opposing force. By optimizing the balance between forces, we show that the single-file capture can be amplified from about 50% to almost 95%. The force location, force strength, and flow rate are used as the optimizing variables. American Chemical Society 2023-07-07 /pmc/articles/PMC10498446/ /pubmed/37417981 http://dx.doi.org/10.1021/acs.biomac.3c00473 Text en © 2023 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by-nc-nd/4.0/Permits non-commercial access and re-use, provided that author attribution and integrity are maintained; but does not permit creation of adaptations or other derivative works (https://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Afrasiabian, Navid Wei, Matthew Denniston, Colin Enhanced Pulley Effect for Translocation: The Interplay of Electrostatic and Hydrodynamic Forces |
title | Enhanced Pulley
Effect for Translocation: The Interplay
of Electrostatic and Hydrodynamic Forces |
title_full | Enhanced Pulley
Effect for Translocation: The Interplay
of Electrostatic and Hydrodynamic Forces |
title_fullStr | Enhanced Pulley
Effect for Translocation: The Interplay
of Electrostatic and Hydrodynamic Forces |
title_full_unstemmed | Enhanced Pulley
Effect for Translocation: The Interplay
of Electrostatic and Hydrodynamic Forces |
title_short | Enhanced Pulley
Effect for Translocation: The Interplay
of Electrostatic and Hydrodynamic Forces |
title_sort | enhanced pulley
effect for translocation: the interplay
of electrostatic and hydrodynamic forces |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10498446/ https://www.ncbi.nlm.nih.gov/pubmed/37417981 http://dx.doi.org/10.1021/acs.biomac.3c00473 |
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