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Enhanced Pulley Effect for Translocation: The Interplay of Electrostatic and Hydrodynamic Forces

[Image: see text] Solid-state nanopore sensors remain a promising solution to the rising global demand for genome sequencing. These single-molecule sensing technologies require single-file translocation for high resolution and accurate detection. In a previous publication, we discovered a hairpin un...

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Autores principales: Afrasiabian, Navid, Wei, Matthew, Denniston, Colin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2023
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10498446/
https://www.ncbi.nlm.nih.gov/pubmed/37417981
http://dx.doi.org/10.1021/acs.biomac.3c00473
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author Afrasiabian, Navid
Wei, Matthew
Denniston, Colin
author_facet Afrasiabian, Navid
Wei, Matthew
Denniston, Colin
author_sort Afrasiabian, Navid
collection PubMed
description [Image: see text] Solid-state nanopore sensors remain a promising solution to the rising global demand for genome sequencing. These single-molecule sensing technologies require single-file translocation for high resolution and accurate detection. In a previous publication, we discovered a hairpin unraveling mechanism, namely, the pulley effect, in a pressure-driven translocation system. In this paper, we further investigate the pulley effect in the presence of pressure-driven fluid flow and an opposing force provided by an electrostatic field as an approach to increase single-file capture probability. A hydrodynamic flow is used to move the polymer forward, and two oppositely charged electrostatic square loops are used to create an opposing force. By optimizing the balance between forces, we show that the single-file capture can be amplified from about 50% to almost 95%. The force location, force strength, and flow rate are used as the optimizing variables.
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spelling pubmed-104984462023-09-14 Enhanced Pulley Effect for Translocation: The Interplay of Electrostatic and Hydrodynamic Forces Afrasiabian, Navid Wei, Matthew Denniston, Colin Biomacromolecules [Image: see text] Solid-state nanopore sensors remain a promising solution to the rising global demand for genome sequencing. These single-molecule sensing technologies require single-file translocation for high resolution and accurate detection. In a previous publication, we discovered a hairpin unraveling mechanism, namely, the pulley effect, in a pressure-driven translocation system. In this paper, we further investigate the pulley effect in the presence of pressure-driven fluid flow and an opposing force provided by an electrostatic field as an approach to increase single-file capture probability. A hydrodynamic flow is used to move the polymer forward, and two oppositely charged electrostatic square loops are used to create an opposing force. By optimizing the balance between forces, we show that the single-file capture can be amplified from about 50% to almost 95%. The force location, force strength, and flow rate are used as the optimizing variables. American Chemical Society 2023-07-07 /pmc/articles/PMC10498446/ /pubmed/37417981 http://dx.doi.org/10.1021/acs.biomac.3c00473 Text en © 2023 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by-nc-nd/4.0/Permits non-commercial access and re-use, provided that author attribution and integrity are maintained; but does not permit creation of adaptations or other derivative works (https://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Afrasiabian, Navid
Wei, Matthew
Denniston, Colin
Enhanced Pulley Effect for Translocation: The Interplay of Electrostatic and Hydrodynamic Forces
title Enhanced Pulley Effect for Translocation: The Interplay of Electrostatic and Hydrodynamic Forces
title_full Enhanced Pulley Effect for Translocation: The Interplay of Electrostatic and Hydrodynamic Forces
title_fullStr Enhanced Pulley Effect for Translocation: The Interplay of Electrostatic and Hydrodynamic Forces
title_full_unstemmed Enhanced Pulley Effect for Translocation: The Interplay of Electrostatic and Hydrodynamic Forces
title_short Enhanced Pulley Effect for Translocation: The Interplay of Electrostatic and Hydrodynamic Forces
title_sort enhanced pulley effect for translocation: the interplay of electrostatic and hydrodynamic forces
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10498446/
https://www.ncbi.nlm.nih.gov/pubmed/37417981
http://dx.doi.org/10.1021/acs.biomac.3c00473
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