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Data-driven estimation of the instantaneous reproduction number and growth rates for the 2022 monkeypox outbreak in Europe

OBJECTIVE: To estimate the instantaneous reproduction number R(t) and the epidemic growth rates for the 2022 monkeypox outbreaks in the European region. METHODS: We gathered daily laboratory-confirmed monkeypox cases in the most affected European countries from the beginning of the outbreak to Septe...

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Autores principales: Saldaña, Fernando, Daza-Torres, Maria L., Aguiar, Maíra
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10499224/
https://www.ncbi.nlm.nih.gov/pubmed/37703247
http://dx.doi.org/10.1371/journal.pone.0290387
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author Saldaña, Fernando
Daza-Torres, Maria L.
Aguiar, Maíra
author_facet Saldaña, Fernando
Daza-Torres, Maria L.
Aguiar, Maíra
author_sort Saldaña, Fernando
collection PubMed
description OBJECTIVE: To estimate the instantaneous reproduction number R(t) and the epidemic growth rates for the 2022 monkeypox outbreaks in the European region. METHODS: We gathered daily laboratory-confirmed monkeypox cases in the most affected European countries from the beginning of the outbreak to September 23, 2022. A data-driven estimation of the instantaneous reproduction number is obtained using a novel filtering type Bayesian inference. A phenomenological growth model coupled with a Bayesian sequential approach to update forecasts over time is used to obtain time-dependent growth rates in several countries. RESULTS: The instantaneous reproduction number R(t) for the laboratory-confirmed monkeypox cases in Spain, France, Germany, the UK, the Netherlands, Portugal, and Italy. At the early phase of the outbreak, our estimation for R(t), which can be used as a proxy for the basic reproduction number R(0), was 2.06 (95% CI 1.63 − 2.54) for Spain, 2.62 (95% CI 2.23 − 3.17) for France, 2.81 (95% CI 2.51 − 3.09) for Germany, 1.82 (95% CI 1.52 − 2.18) for the UK, 2.84 (95% CI 2.07 − 3.91) for the Netherlands, 1.13 (95% CI 0.99 − 1.32) for Portugal, 3.06 (95% CI 2.48 − 3.62) for Italy. Cumulative cases for these countries present subexponential rather than exponential growth dynamics. CONCLUSIONS: Our findings suggest that the current monkeypox outbreaks present limited transmission chains of human-to-human secondary infection so the possibility of a huge pandemic is very low. Confirmed monkeypox cases are decreasing significantly in the European region, the decline might be attributed to public health interventions and behavioral changes in the population due to increased risk perception. Nevertheless, further strategies toward elimination are essential to avoid the subsequent evolution of the monkeypox virus that can result in new outbreaks.
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spelling pubmed-104992242023-09-14 Data-driven estimation of the instantaneous reproduction number and growth rates for the 2022 monkeypox outbreak in Europe Saldaña, Fernando Daza-Torres, Maria L. Aguiar, Maíra PLoS One Research Article OBJECTIVE: To estimate the instantaneous reproduction number R(t) and the epidemic growth rates for the 2022 monkeypox outbreaks in the European region. METHODS: We gathered daily laboratory-confirmed monkeypox cases in the most affected European countries from the beginning of the outbreak to September 23, 2022. A data-driven estimation of the instantaneous reproduction number is obtained using a novel filtering type Bayesian inference. A phenomenological growth model coupled with a Bayesian sequential approach to update forecasts over time is used to obtain time-dependent growth rates in several countries. RESULTS: The instantaneous reproduction number R(t) for the laboratory-confirmed monkeypox cases in Spain, France, Germany, the UK, the Netherlands, Portugal, and Italy. At the early phase of the outbreak, our estimation for R(t), which can be used as a proxy for the basic reproduction number R(0), was 2.06 (95% CI 1.63 − 2.54) for Spain, 2.62 (95% CI 2.23 − 3.17) for France, 2.81 (95% CI 2.51 − 3.09) for Germany, 1.82 (95% CI 1.52 − 2.18) for the UK, 2.84 (95% CI 2.07 − 3.91) for the Netherlands, 1.13 (95% CI 0.99 − 1.32) for Portugal, 3.06 (95% CI 2.48 − 3.62) for Italy. Cumulative cases for these countries present subexponential rather than exponential growth dynamics. CONCLUSIONS: Our findings suggest that the current monkeypox outbreaks present limited transmission chains of human-to-human secondary infection so the possibility of a huge pandemic is very low. Confirmed monkeypox cases are decreasing significantly in the European region, the decline might be attributed to public health interventions and behavioral changes in the population due to increased risk perception. Nevertheless, further strategies toward elimination are essential to avoid the subsequent evolution of the monkeypox virus that can result in new outbreaks. Public Library of Science 2023-09-13 /pmc/articles/PMC10499224/ /pubmed/37703247 http://dx.doi.org/10.1371/journal.pone.0290387 Text en © 2023 Saldaña et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Saldaña, Fernando
Daza-Torres, Maria L.
Aguiar, Maíra
Data-driven estimation of the instantaneous reproduction number and growth rates for the 2022 monkeypox outbreak in Europe
title Data-driven estimation of the instantaneous reproduction number and growth rates for the 2022 monkeypox outbreak in Europe
title_full Data-driven estimation of the instantaneous reproduction number and growth rates for the 2022 monkeypox outbreak in Europe
title_fullStr Data-driven estimation of the instantaneous reproduction number and growth rates for the 2022 monkeypox outbreak in Europe
title_full_unstemmed Data-driven estimation of the instantaneous reproduction number and growth rates for the 2022 monkeypox outbreak in Europe
title_short Data-driven estimation of the instantaneous reproduction number and growth rates for the 2022 monkeypox outbreak in Europe
title_sort data-driven estimation of the instantaneous reproduction number and growth rates for the 2022 monkeypox outbreak in europe
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10499224/
https://www.ncbi.nlm.nih.gov/pubmed/37703247
http://dx.doi.org/10.1371/journal.pone.0290387
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