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Detection of diagnostic and prognostic methylation-based signatures in liquid biopsy specimens from patients with meningiomas

Recurrence of meningiomas is unpredictable by current invasive methods based on surgically removed specimens. Identification of patients likely to recur using noninvasive approaches could inform treatment strategy, whether intervention or monitoring. In this study, we analyze the DNA methylation lev...

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Autores principales: Herrgott, Grayson A., Snyder, James M., She, Ruicong, Malta, Tathiane M., Sabedot, Thais S., Lee, Ian Y., Pawloski, Jacob, Podolsky-Gondim, Guilherme G., Asmaro, Karam P., Zhang, Jiaqi, Cannella, Cara E., Nelson, Kevin, Thomas, Bartow, deCarvalho, Ana C., Hasselbach, Laura A., Tundo, Kelly M., Newaz, Rehnuma, Transou, Andrea, Morosini, Natalia, Francisco, Victor, Poisson, Laila M., Chitale, Dhananjay, Mukherjee, Abir, Mosella, Maritza S., Robin, Adam M., Walbert, Tobias, Rosenblum, Mark, Mikkelsen, Tom, Kalkanis, Steven, Tirapelli, Daniela P. C., Weisenberger, Daniel J., Carlotti, Carlos G., Rock, Jack, Castro, Ana Valeria, Noushmehr, Houtan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10499807/
https://www.ncbi.nlm.nih.gov/pubmed/37704607
http://dx.doi.org/10.1038/s41467-023-41434-z
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author Herrgott, Grayson A.
Snyder, James M.
She, Ruicong
Malta, Tathiane M.
Sabedot, Thais S.
Lee, Ian Y.
Pawloski, Jacob
Podolsky-Gondim, Guilherme G.
Asmaro, Karam P.
Zhang, Jiaqi
Cannella, Cara E.
Nelson, Kevin
Thomas, Bartow
deCarvalho, Ana C.
Hasselbach, Laura A.
Tundo, Kelly M.
Newaz, Rehnuma
Transou, Andrea
Morosini, Natalia
Francisco, Victor
Poisson, Laila M.
Chitale, Dhananjay
Mukherjee, Abir
Mosella, Maritza S.
Robin, Adam M.
Walbert, Tobias
Rosenblum, Mark
Mikkelsen, Tom
Kalkanis, Steven
Tirapelli, Daniela P. C.
Weisenberger, Daniel J.
Carlotti, Carlos G.
Rock, Jack
Castro, Ana Valeria
Noushmehr, Houtan
author_facet Herrgott, Grayson A.
Snyder, James M.
She, Ruicong
Malta, Tathiane M.
Sabedot, Thais S.
Lee, Ian Y.
Pawloski, Jacob
Podolsky-Gondim, Guilherme G.
Asmaro, Karam P.
Zhang, Jiaqi
Cannella, Cara E.
Nelson, Kevin
Thomas, Bartow
deCarvalho, Ana C.
Hasselbach, Laura A.
Tundo, Kelly M.
Newaz, Rehnuma
Transou, Andrea
Morosini, Natalia
Francisco, Victor
Poisson, Laila M.
Chitale, Dhananjay
Mukherjee, Abir
Mosella, Maritza S.
Robin, Adam M.
Walbert, Tobias
Rosenblum, Mark
Mikkelsen, Tom
Kalkanis, Steven
Tirapelli, Daniela P. C.
Weisenberger, Daniel J.
Carlotti, Carlos G.
Rock, Jack
Castro, Ana Valeria
Noushmehr, Houtan
author_sort Herrgott, Grayson A.
collection PubMed
description Recurrence of meningiomas is unpredictable by current invasive methods based on surgically removed specimens. Identification of patients likely to recur using noninvasive approaches could inform treatment strategy, whether intervention or monitoring. In this study, we analyze the DNA methylation levels in blood (serum and plasma) and tissue samples from 155 meningioma patients, compared to other central nervous system tumor and non-tumor entities. We discover DNA methylation markers unique to meningiomas and use artificial intelligence to create accurate and universal models for identifying and predicting meningioma recurrence, using either blood or tissue samples. Here we show that liquid biopsy is a potential noninvasive and reliable tool for diagnosing and predicting outcomes in meningioma patients. This approach can improve personalized management strategies for these patients.
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spelling pubmed-104998072023-09-15 Detection of diagnostic and prognostic methylation-based signatures in liquid biopsy specimens from patients with meningiomas Herrgott, Grayson A. Snyder, James M. She, Ruicong Malta, Tathiane M. Sabedot, Thais S. Lee, Ian Y. Pawloski, Jacob Podolsky-Gondim, Guilherme G. Asmaro, Karam P. Zhang, Jiaqi Cannella, Cara E. Nelson, Kevin Thomas, Bartow deCarvalho, Ana C. Hasselbach, Laura A. Tundo, Kelly M. Newaz, Rehnuma Transou, Andrea Morosini, Natalia Francisco, Victor Poisson, Laila M. Chitale, Dhananjay Mukherjee, Abir Mosella, Maritza S. Robin, Adam M. Walbert, Tobias Rosenblum, Mark Mikkelsen, Tom Kalkanis, Steven Tirapelli, Daniela P. C. Weisenberger, Daniel J. Carlotti, Carlos G. Rock, Jack Castro, Ana Valeria Noushmehr, Houtan Nat Commun Article Recurrence of meningiomas is unpredictable by current invasive methods based on surgically removed specimens. Identification of patients likely to recur using noninvasive approaches could inform treatment strategy, whether intervention or monitoring. In this study, we analyze the DNA methylation levels in blood (serum and plasma) and tissue samples from 155 meningioma patients, compared to other central nervous system tumor and non-tumor entities. We discover DNA methylation markers unique to meningiomas and use artificial intelligence to create accurate and universal models for identifying and predicting meningioma recurrence, using either blood or tissue samples. Here we show that liquid biopsy is a potential noninvasive and reliable tool for diagnosing and predicting outcomes in meningioma patients. This approach can improve personalized management strategies for these patients. Nature Publishing Group UK 2023-09-13 /pmc/articles/PMC10499807/ /pubmed/37704607 http://dx.doi.org/10.1038/s41467-023-41434-z Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Herrgott, Grayson A.
Snyder, James M.
She, Ruicong
Malta, Tathiane M.
Sabedot, Thais S.
Lee, Ian Y.
Pawloski, Jacob
Podolsky-Gondim, Guilherme G.
Asmaro, Karam P.
Zhang, Jiaqi
Cannella, Cara E.
Nelson, Kevin
Thomas, Bartow
deCarvalho, Ana C.
Hasselbach, Laura A.
Tundo, Kelly M.
Newaz, Rehnuma
Transou, Andrea
Morosini, Natalia
Francisco, Victor
Poisson, Laila M.
Chitale, Dhananjay
Mukherjee, Abir
Mosella, Maritza S.
Robin, Adam M.
Walbert, Tobias
Rosenblum, Mark
Mikkelsen, Tom
Kalkanis, Steven
Tirapelli, Daniela P. C.
Weisenberger, Daniel J.
Carlotti, Carlos G.
Rock, Jack
Castro, Ana Valeria
Noushmehr, Houtan
Detection of diagnostic and prognostic methylation-based signatures in liquid biopsy specimens from patients with meningiomas
title Detection of diagnostic and prognostic methylation-based signatures in liquid biopsy specimens from patients with meningiomas
title_full Detection of diagnostic and prognostic methylation-based signatures in liquid biopsy specimens from patients with meningiomas
title_fullStr Detection of diagnostic and prognostic methylation-based signatures in liquid biopsy specimens from patients with meningiomas
title_full_unstemmed Detection of diagnostic and prognostic methylation-based signatures in liquid biopsy specimens from patients with meningiomas
title_short Detection of diagnostic and prognostic methylation-based signatures in liquid biopsy specimens from patients with meningiomas
title_sort detection of diagnostic and prognostic methylation-based signatures in liquid biopsy specimens from patients with meningiomas
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10499807/
https://www.ncbi.nlm.nih.gov/pubmed/37704607
http://dx.doi.org/10.1038/s41467-023-41434-z
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