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Molecular typing and prognostic risk models for ovarian cancer: a study based on cell differentiation trajectory

Ovarian cancer is a heterogeneous disease with different molecular phenotypes. We performed molecular typing of ovarian cancer using cell differentiation trajectory analysis and proposed a prognostic risk scoring model. Using the copy number variation provided by inferCNV, we identified malignant tu...

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Autores principales: Chen, Tingfeng, Ni, Tingting, Mu, Lan, Ying, Zhou, Zhang, Hanqun, Wang, Zi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10500593/
https://www.ncbi.nlm.nih.gov/pubmed/37719881
http://dx.doi.org/10.3389/fcell.2023.1131494
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author Chen, Tingfeng
Ni, Tingting
Mu, Lan
Ying, Zhou
Zhang, Hanqun
Wang, Zi
author_facet Chen, Tingfeng
Ni, Tingting
Mu, Lan
Ying, Zhou
Zhang, Hanqun
Wang, Zi
author_sort Chen, Tingfeng
collection PubMed
description Ovarian cancer is a heterogeneous disease with different molecular phenotypes. We performed molecular typing of ovarian cancer using cell differentiation trajectory analysis and proposed a prognostic risk scoring model. Using the copy number variation provided by inferCNV, we identified malignant tumor cells. Then, ovarian cancer samples were divided into four subtypes based on differentiation-related genes (DRGs). There were significant differences in survival rates, clinical features, tumor microenvironment scores, and the expression levels of ICGs among the subtypes. Based on nine DRGs, a prognostic risk score model was generated (AUC at 1 year: 0.749; 3 years: 0.651). Then we obtained a nomogram of the prognostic variable combination, including risk scores and clinicopathological characteristics, and predicted the 1-, 3- and 5-year overall survival. Finally, we explored some issues of immune escape using the established risk model. Our study demonstrates the significant influence of cell differentiation on predicting prognosis in OV patients and provides new insights for OV treatment and potential immunotherapeutic strategies.
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spelling pubmed-105005932023-09-15 Molecular typing and prognostic risk models for ovarian cancer: a study based on cell differentiation trajectory Chen, Tingfeng Ni, Tingting Mu, Lan Ying, Zhou Zhang, Hanqun Wang, Zi Front Cell Dev Biol Cell and Developmental Biology Ovarian cancer is a heterogeneous disease with different molecular phenotypes. We performed molecular typing of ovarian cancer using cell differentiation trajectory analysis and proposed a prognostic risk scoring model. Using the copy number variation provided by inferCNV, we identified malignant tumor cells. Then, ovarian cancer samples were divided into four subtypes based on differentiation-related genes (DRGs). There were significant differences in survival rates, clinical features, tumor microenvironment scores, and the expression levels of ICGs among the subtypes. Based on nine DRGs, a prognostic risk score model was generated (AUC at 1 year: 0.749; 3 years: 0.651). Then we obtained a nomogram of the prognostic variable combination, including risk scores and clinicopathological characteristics, and predicted the 1-, 3- and 5-year overall survival. Finally, we explored some issues of immune escape using the established risk model. Our study demonstrates the significant influence of cell differentiation on predicting prognosis in OV patients and provides new insights for OV treatment and potential immunotherapeutic strategies. Frontiers Media S.A. 2023-08-31 /pmc/articles/PMC10500593/ /pubmed/37719881 http://dx.doi.org/10.3389/fcell.2023.1131494 Text en Copyright © 2023 Chen, Ni, Mu, Ying, Zhang and Wang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Cell and Developmental Biology
Chen, Tingfeng
Ni, Tingting
Mu, Lan
Ying, Zhou
Zhang, Hanqun
Wang, Zi
Molecular typing and prognostic risk models for ovarian cancer: a study based on cell differentiation trajectory
title Molecular typing and prognostic risk models for ovarian cancer: a study based on cell differentiation trajectory
title_full Molecular typing and prognostic risk models for ovarian cancer: a study based on cell differentiation trajectory
title_fullStr Molecular typing and prognostic risk models for ovarian cancer: a study based on cell differentiation trajectory
title_full_unstemmed Molecular typing and prognostic risk models for ovarian cancer: a study based on cell differentiation trajectory
title_short Molecular typing and prognostic risk models for ovarian cancer: a study based on cell differentiation trajectory
title_sort molecular typing and prognostic risk models for ovarian cancer: a study based on cell differentiation trajectory
topic Cell and Developmental Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10500593/
https://www.ncbi.nlm.nih.gov/pubmed/37719881
http://dx.doi.org/10.3389/fcell.2023.1131494
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