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Molecular typing and prognostic risk models for ovarian cancer: a study based on cell differentiation trajectory
Ovarian cancer is a heterogeneous disease with different molecular phenotypes. We performed molecular typing of ovarian cancer using cell differentiation trajectory analysis and proposed a prognostic risk scoring model. Using the copy number variation provided by inferCNV, we identified malignant tu...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10500593/ https://www.ncbi.nlm.nih.gov/pubmed/37719881 http://dx.doi.org/10.3389/fcell.2023.1131494 |
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author | Chen, Tingfeng Ni, Tingting Mu, Lan Ying, Zhou Zhang, Hanqun Wang, Zi |
author_facet | Chen, Tingfeng Ni, Tingting Mu, Lan Ying, Zhou Zhang, Hanqun Wang, Zi |
author_sort | Chen, Tingfeng |
collection | PubMed |
description | Ovarian cancer is a heterogeneous disease with different molecular phenotypes. We performed molecular typing of ovarian cancer using cell differentiation trajectory analysis and proposed a prognostic risk scoring model. Using the copy number variation provided by inferCNV, we identified malignant tumor cells. Then, ovarian cancer samples were divided into four subtypes based on differentiation-related genes (DRGs). There were significant differences in survival rates, clinical features, tumor microenvironment scores, and the expression levels of ICGs among the subtypes. Based on nine DRGs, a prognostic risk score model was generated (AUC at 1 year: 0.749; 3 years: 0.651). Then we obtained a nomogram of the prognostic variable combination, including risk scores and clinicopathological characteristics, and predicted the 1-, 3- and 5-year overall survival. Finally, we explored some issues of immune escape using the established risk model. Our study demonstrates the significant influence of cell differentiation on predicting prognosis in OV patients and provides new insights for OV treatment and potential immunotherapeutic strategies. |
format | Online Article Text |
id | pubmed-10500593 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-105005932023-09-15 Molecular typing and prognostic risk models for ovarian cancer: a study based on cell differentiation trajectory Chen, Tingfeng Ni, Tingting Mu, Lan Ying, Zhou Zhang, Hanqun Wang, Zi Front Cell Dev Biol Cell and Developmental Biology Ovarian cancer is a heterogeneous disease with different molecular phenotypes. We performed molecular typing of ovarian cancer using cell differentiation trajectory analysis and proposed a prognostic risk scoring model. Using the copy number variation provided by inferCNV, we identified malignant tumor cells. Then, ovarian cancer samples were divided into four subtypes based on differentiation-related genes (DRGs). There were significant differences in survival rates, clinical features, tumor microenvironment scores, and the expression levels of ICGs among the subtypes. Based on nine DRGs, a prognostic risk score model was generated (AUC at 1 year: 0.749; 3 years: 0.651). Then we obtained a nomogram of the prognostic variable combination, including risk scores and clinicopathological characteristics, and predicted the 1-, 3- and 5-year overall survival. Finally, we explored some issues of immune escape using the established risk model. Our study demonstrates the significant influence of cell differentiation on predicting prognosis in OV patients and provides new insights for OV treatment and potential immunotherapeutic strategies. Frontiers Media S.A. 2023-08-31 /pmc/articles/PMC10500593/ /pubmed/37719881 http://dx.doi.org/10.3389/fcell.2023.1131494 Text en Copyright © 2023 Chen, Ni, Mu, Ying, Zhang and Wang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Cell and Developmental Biology Chen, Tingfeng Ni, Tingting Mu, Lan Ying, Zhou Zhang, Hanqun Wang, Zi Molecular typing and prognostic risk models for ovarian cancer: a study based on cell differentiation trajectory |
title | Molecular typing and prognostic risk models for ovarian cancer: a study based on cell differentiation trajectory |
title_full | Molecular typing and prognostic risk models for ovarian cancer: a study based on cell differentiation trajectory |
title_fullStr | Molecular typing and prognostic risk models for ovarian cancer: a study based on cell differentiation trajectory |
title_full_unstemmed | Molecular typing and prognostic risk models for ovarian cancer: a study based on cell differentiation trajectory |
title_short | Molecular typing and prognostic risk models for ovarian cancer: a study based on cell differentiation trajectory |
title_sort | molecular typing and prognostic risk models for ovarian cancer: a study based on cell differentiation trajectory |
topic | Cell and Developmental Biology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10500593/ https://www.ncbi.nlm.nih.gov/pubmed/37719881 http://dx.doi.org/10.3389/fcell.2023.1131494 |
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