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Relaxation-induced dipolar exchange with recoupling (RIDER) distortions in CODEX experiments
Chemical shift anisotropy (CSA) and dipolar CODEX (Cenralband Only Detection of EXchange) experiments enable abundant quantitative information on the reorientation of the CSA and dipolar tensors to be obtained on millisecond–second timescales. At the same time, proper performance of the experiments...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Copernicus GmbH
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10500706/ https://www.ncbi.nlm.nih.gov/pubmed/37904827 http://dx.doi.org/10.5194/mr-1-247-2020 |
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author | Krushelnitsky, Alexey Saalwächter, Kay |
author_facet | Krushelnitsky, Alexey Saalwächter, Kay |
author_sort | Krushelnitsky, Alexey |
collection | PubMed |
description | Chemical shift anisotropy (CSA) and dipolar CODEX (Cenralband Only Detection of EXchange) experiments enable abundant quantitative information on the reorientation of the CSA and dipolar tensors to be obtained on millisecond–second timescales. At the same time, proper performance of the experiments and data analysis can often be a challenge since CODEX is prone to some interfering effects that may lead to incorrect interpretation of the experimental results. One of the most important such effects is RIDER (relaxation-induced dipolar exchange with recoupling). It appears due to the dipolar interaction of the observed [Formula: see text] nuclei with some other nuclei, which causes an apparent decay in the mixing time dependence of the signal intensity reflecting not molecular motion, but spin flips of the adjacent nuclei. This may hamper obtaining correct values of the parameters of molecular mobility. In this contribution we consider in detail the reasons why the RIDER distortions remain even under decoupling conditions and propose measures to eliminate them. That is, we suggest (1) using an additional [Formula: see text] filter between the cross-polarization (CP) section and the CODEX recoupling blocks that suppresses the interfering anti-phase coherence responsible for the [Formula: see text] -H RIDER and (2) recording only the cosine component of the CODEX signal since it is less prone to the RIDER distortions in comparison to the sine component. The experiments were conducted on rigid model substances as well as microcrystalline [Formula: see text] H [Formula: see text] [Formula: see text] N-enriched proteins (GB1 and SH3) with a partial back-exchange of labile protons. Standard CSA and dipolar CODEX experiments reveal a fast-decaying component in the mixing time dependence of [Formula: see text] N nuclei in proteins, which can be misinterpreted as a slow overall protein rocking motion. However, the RIDER-free experimental setup provides flat mixing time dependences, meaning that the studied proteins do not undergo global motions on the millisecond timescale. |
format | Online Article Text |
id | pubmed-10500706 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Copernicus GmbH |
record_format | MEDLINE/PubMed |
spelling | pubmed-105007062023-10-30 Relaxation-induced dipolar exchange with recoupling (RIDER) distortions in CODEX experiments Krushelnitsky, Alexey Saalwächter, Kay Magn Reson (Gott) Research Article Chemical shift anisotropy (CSA) and dipolar CODEX (Cenralband Only Detection of EXchange) experiments enable abundant quantitative information on the reorientation of the CSA and dipolar tensors to be obtained on millisecond–second timescales. At the same time, proper performance of the experiments and data analysis can often be a challenge since CODEX is prone to some interfering effects that may lead to incorrect interpretation of the experimental results. One of the most important such effects is RIDER (relaxation-induced dipolar exchange with recoupling). It appears due to the dipolar interaction of the observed [Formula: see text] nuclei with some other nuclei, which causes an apparent decay in the mixing time dependence of the signal intensity reflecting not molecular motion, but spin flips of the adjacent nuclei. This may hamper obtaining correct values of the parameters of molecular mobility. In this contribution we consider in detail the reasons why the RIDER distortions remain even under decoupling conditions and propose measures to eliminate them. That is, we suggest (1) using an additional [Formula: see text] filter between the cross-polarization (CP) section and the CODEX recoupling blocks that suppresses the interfering anti-phase coherence responsible for the [Formula: see text] -H RIDER and (2) recording only the cosine component of the CODEX signal since it is less prone to the RIDER distortions in comparison to the sine component. The experiments were conducted on rigid model substances as well as microcrystalline [Formula: see text] H [Formula: see text] [Formula: see text] N-enriched proteins (GB1 and SH3) with a partial back-exchange of labile protons. Standard CSA and dipolar CODEX experiments reveal a fast-decaying component in the mixing time dependence of [Formula: see text] N nuclei in proteins, which can be misinterpreted as a slow overall protein rocking motion. However, the RIDER-free experimental setup provides flat mixing time dependences, meaning that the studied proteins do not undergo global motions on the millisecond timescale. Copernicus GmbH 2020-10-29 /pmc/articles/PMC10500706/ /pubmed/37904827 http://dx.doi.org/10.5194/mr-1-247-2020 Text en Copyright: © 2020 Alexey Krushelnitsky and Kay Saalwächter https://creativecommons.org/licenses/by/4.0/This work is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this licence, visit https://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Research Article Krushelnitsky, Alexey Saalwächter, Kay Relaxation-induced dipolar exchange with recoupling (RIDER) distortions in CODEX experiments |
title | Relaxation-induced dipolar exchange with recoupling (RIDER) distortions in CODEX experiments |
title_full | Relaxation-induced dipolar exchange with recoupling (RIDER) distortions in CODEX experiments |
title_fullStr | Relaxation-induced dipolar exchange with recoupling (RIDER) distortions in CODEX experiments |
title_full_unstemmed | Relaxation-induced dipolar exchange with recoupling (RIDER) distortions in CODEX experiments |
title_short | Relaxation-induced dipolar exchange with recoupling (RIDER) distortions in CODEX experiments |
title_sort | relaxation-induced dipolar exchange with recoupling (rider) distortions in codex experiments |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10500706/ https://www.ncbi.nlm.nih.gov/pubmed/37904827 http://dx.doi.org/10.5194/mr-1-247-2020 |
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