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Identification and verification of ferroptosis‐related genes in diabetic foot using bioinformatics analysis

Ferroptosis is a novel form of cell death that plays a key role in several diseases, including inflammation and tumours; however, the role of ferroptosis‐related genes in diabetic foot remains unclear. Herein, diabetic foot‐related genes were downloaded from the Gene Expression Omnibus and the ferro...

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Autores principales: Wang, Xiaoxiang, Dai, Shangtai, Zheng, Wenlian, Chen, Wentao, Li, Jiehua, Chen, Xiaodong, Zhou, Sitong, Yang, Ronghua
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Blackwell Publishing Ltd 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10502281/
https://www.ncbi.nlm.nih.gov/pubmed/37249237
http://dx.doi.org/10.1111/iwj.14198
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author Wang, Xiaoxiang
Dai, Shangtai
Zheng, Wenlian
Chen, Wentao
Li, Jiehua
Chen, Xiaodong
Zhou, Sitong
Yang, Ronghua
author_facet Wang, Xiaoxiang
Dai, Shangtai
Zheng, Wenlian
Chen, Wentao
Li, Jiehua
Chen, Xiaodong
Zhou, Sitong
Yang, Ronghua
author_sort Wang, Xiaoxiang
collection PubMed
description Ferroptosis is a novel form of cell death that plays a key role in several diseases, including inflammation and tumours; however, the role of ferroptosis‐related genes in diabetic foot remains unclear. Herein, diabetic foot‐related genes were downloaded from the Gene Expression Omnibus and the ferroptosis database (FerrDb). The least absolute shrinkage and selection operator regression algorithm was used to construct a related risk model, and differentially expressed genes were analysed through immune infiltration. Finally, we identified relevant core genes through a protein–protein interaction network, subsequently verified using immunohistochemistry. Comprehensive analysis showed 198 genes that were differentially expressed during ferroptosis. Based on functional enrichment analysis, these genes were primarily involved in cell response, chemical stimulation, and autophagy. Using the CIBERSORT algorithm, we calculated the immune infiltration of 22 different types of immune cells in diabetic foot and normal tissues. The protein–protein interaction network identified the hub gene TP53, and according to immunohistochemistry, the expression of TP53 was high in diabetic foot tissues but low in normal tissues. Accordingly, we identified the ferroptosis‐related gene TP53 in the diabetic foot, which may play a key role in the pathogenesis of diabetic foot and could be used as a potential biomarker.
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spelling pubmed-105022812023-09-16 Identification and verification of ferroptosis‐related genes in diabetic foot using bioinformatics analysis Wang, Xiaoxiang Dai, Shangtai Zheng, Wenlian Chen, Wentao Li, Jiehua Chen, Xiaodong Zhou, Sitong Yang, Ronghua Int Wound J Original Articles Ferroptosis is a novel form of cell death that plays a key role in several diseases, including inflammation and tumours; however, the role of ferroptosis‐related genes in diabetic foot remains unclear. Herein, diabetic foot‐related genes were downloaded from the Gene Expression Omnibus and the ferroptosis database (FerrDb). The least absolute shrinkage and selection operator regression algorithm was used to construct a related risk model, and differentially expressed genes were analysed through immune infiltration. Finally, we identified relevant core genes through a protein–protein interaction network, subsequently verified using immunohistochemistry. Comprehensive analysis showed 198 genes that were differentially expressed during ferroptosis. Based on functional enrichment analysis, these genes were primarily involved in cell response, chemical stimulation, and autophagy. Using the CIBERSORT algorithm, we calculated the immune infiltration of 22 different types of immune cells in diabetic foot and normal tissues. The protein–protein interaction network identified the hub gene TP53, and according to immunohistochemistry, the expression of TP53 was high in diabetic foot tissues but low in normal tissues. Accordingly, we identified the ferroptosis‐related gene TP53 in the diabetic foot, which may play a key role in the pathogenesis of diabetic foot and could be used as a potential biomarker. Blackwell Publishing Ltd 2023-05-30 /pmc/articles/PMC10502281/ /pubmed/37249237 http://dx.doi.org/10.1111/iwj.14198 Text en © 2023 The Authors. International Wound Journal published by Medicalhelplines.com Inc and John Wiley & Sons Ltd. https://creativecommons.org/licenses/by-nc/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.
spellingShingle Original Articles
Wang, Xiaoxiang
Dai, Shangtai
Zheng, Wenlian
Chen, Wentao
Li, Jiehua
Chen, Xiaodong
Zhou, Sitong
Yang, Ronghua
Identification and verification of ferroptosis‐related genes in diabetic foot using bioinformatics analysis
title Identification and verification of ferroptosis‐related genes in diabetic foot using bioinformatics analysis
title_full Identification and verification of ferroptosis‐related genes in diabetic foot using bioinformatics analysis
title_fullStr Identification and verification of ferroptosis‐related genes in diabetic foot using bioinformatics analysis
title_full_unstemmed Identification and verification of ferroptosis‐related genes in diabetic foot using bioinformatics analysis
title_short Identification and verification of ferroptosis‐related genes in diabetic foot using bioinformatics analysis
title_sort identification and verification of ferroptosis‐related genes in diabetic foot using bioinformatics analysis
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10502281/
https://www.ncbi.nlm.nih.gov/pubmed/37249237
http://dx.doi.org/10.1111/iwj.14198
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