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Forward variable selection for random forest models
Random forest is a popular prediction approach for handling high dimensional covariates. However, it often becomes infeasible to interpret the obtained high dimensional and non-parametric model. Aiming for an interpretable predictive model, we develop a forward variable selection method using the co...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10503461/ https://www.ncbi.nlm.nih.gov/pubmed/37720244 http://dx.doi.org/10.1080/02664763.2022.2095362 |
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author | Velthoen, Jasper Cai, Juan-Juan Jongbloed, Geurt |
author_facet | Velthoen, Jasper Cai, Juan-Juan Jongbloed, Geurt |
author_sort | Velthoen, Jasper |
collection | PubMed |
description | Random forest is a popular prediction approach for handling high dimensional covariates. However, it often becomes infeasible to interpret the obtained high dimensional and non-parametric model. Aiming for an interpretable predictive model, we develop a forward variable selection method using the continuous ranked probability score (CRPS) as the loss function. eOur stepwise procedure selects at each step a variable that minimizes the CRPS risk and a stopping criterion for selection is designed based on an estimation of the CRPS risk difference of two consecutive steps. We provide mathematical motivation for our method by proving that in a population sense, the method attains the optimal set. In a simulation study, we compare the performance of our method with an existing variable selection method, for different sample sizes and correlation strength of covariates. Our method is observed to have a much lower false positive rate. We also demonstrate an application of our method to statistical post-processing of daily maximum temperature forecasts in the Netherlands. Our method selects about 10% covariates while retaining the same predictive power. |
format | Online Article Text |
id | pubmed-10503461 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-105034612023-09-16 Forward variable selection for random forest models Velthoen, Jasper Cai, Juan-Juan Jongbloed, Geurt J Appl Stat Articles Random forest is a popular prediction approach for handling high dimensional covariates. However, it often becomes infeasible to interpret the obtained high dimensional and non-parametric model. Aiming for an interpretable predictive model, we develop a forward variable selection method using the continuous ranked probability score (CRPS) as the loss function. eOur stepwise procedure selects at each step a variable that minimizes the CRPS risk and a stopping criterion for selection is designed based on an estimation of the CRPS risk difference of two consecutive steps. We provide mathematical motivation for our method by proving that in a population sense, the method attains the optimal set. In a simulation study, we compare the performance of our method with an existing variable selection method, for different sample sizes and correlation strength of covariates. Our method is observed to have a much lower false positive rate. We also demonstrate an application of our method to statistical post-processing of daily maximum temperature forecasts in the Netherlands. Our method selects about 10% covariates while retaining the same predictive power. Taylor & Francis 2022-07-18 /pmc/articles/PMC10503461/ /pubmed/37720244 http://dx.doi.org/10.1080/02664763.2022.2095362 Text en © 2023 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. The terms on which this article has been published allow the posting of the Accepted Manuscript in a repository by the author(s) or with their consent. |
spellingShingle | Articles Velthoen, Jasper Cai, Juan-Juan Jongbloed, Geurt Forward variable selection for random forest models |
title | Forward variable selection for random forest models |
title_full | Forward variable selection for random forest models |
title_fullStr | Forward variable selection for random forest models |
title_full_unstemmed | Forward variable selection for random forest models |
title_short | Forward variable selection for random forest models |
title_sort | forward variable selection for random forest models |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10503461/ https://www.ncbi.nlm.nih.gov/pubmed/37720244 http://dx.doi.org/10.1080/02664763.2022.2095362 |
work_keys_str_mv | AT velthoenjasper forwardvariableselectionforrandomforestmodels AT caijuanjuan forwardvariableselectionforrandomforestmodels AT jongbloedgeurt forwardvariableselectionforrandomforestmodels |