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Replicating superspreader dynamics with compartmental models

Infectious disease outbreaks often exhibit superspreader dynamics, where most infected people generate no, or few secondary cases, and only a small fraction of individuals are responsible for a large proportion of transmission. Although capturing this heterogeneity is critical for estimating outbrea...

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Autores principales: Meehan, Michael T., Hughes, Angus, Ragonnet, Romain R., Adekunle, Adeshina I., Trauer, James M., Jayasundara, Pavithra, McBryde, Emma S., Henderson, Alec S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10504364/
https://www.ncbi.nlm.nih.gov/pubmed/37714942
http://dx.doi.org/10.1038/s41598-023-42567-3
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author Meehan, Michael T.
Hughes, Angus
Ragonnet, Romain R.
Adekunle, Adeshina I.
Trauer, James M.
Jayasundara, Pavithra
McBryde, Emma S.
Henderson, Alec S.
author_facet Meehan, Michael T.
Hughes, Angus
Ragonnet, Romain R.
Adekunle, Adeshina I.
Trauer, James M.
Jayasundara, Pavithra
McBryde, Emma S.
Henderson, Alec S.
author_sort Meehan, Michael T.
collection PubMed
description Infectious disease outbreaks often exhibit superspreader dynamics, where most infected people generate no, or few secondary cases, and only a small fraction of individuals are responsible for a large proportion of transmission. Although capturing this heterogeneity is critical for estimating outbreak risk and the effectiveness of group-specific interventions, it is typically neglected in compartmental models of infectious disease transmission—which constitute the most common transmission dynamic modeling framework. In this study we propose different classes of compartmental epidemic models that incorporate transmission heterogeneity, fit them to a number of real outbreak datasets, and benchmark their performance against the canonical superspreader model (i.e., the negative binomial branching process model). We find that properly constructed compartmental models can capably reproduce observed superspreader dynamics and we provide the pathogen-specific parameter settings required to do so. As a consequence, we also show that compartmental models parameterized according to a binary clinical classification have limited support.
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spelling pubmed-105043642023-09-17 Replicating superspreader dynamics with compartmental models Meehan, Michael T. Hughes, Angus Ragonnet, Romain R. Adekunle, Adeshina I. Trauer, James M. Jayasundara, Pavithra McBryde, Emma S. Henderson, Alec S. Sci Rep Article Infectious disease outbreaks often exhibit superspreader dynamics, where most infected people generate no, or few secondary cases, and only a small fraction of individuals are responsible for a large proportion of transmission. Although capturing this heterogeneity is critical for estimating outbreak risk and the effectiveness of group-specific interventions, it is typically neglected in compartmental models of infectious disease transmission—which constitute the most common transmission dynamic modeling framework. In this study we propose different classes of compartmental epidemic models that incorporate transmission heterogeneity, fit them to a number of real outbreak datasets, and benchmark their performance against the canonical superspreader model (i.e., the negative binomial branching process model). We find that properly constructed compartmental models can capably reproduce observed superspreader dynamics and we provide the pathogen-specific parameter settings required to do so. As a consequence, we also show that compartmental models parameterized according to a binary clinical classification have limited support. Nature Publishing Group UK 2023-09-15 /pmc/articles/PMC10504364/ /pubmed/37714942 http://dx.doi.org/10.1038/s41598-023-42567-3 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Meehan, Michael T.
Hughes, Angus
Ragonnet, Romain R.
Adekunle, Adeshina I.
Trauer, James M.
Jayasundara, Pavithra
McBryde, Emma S.
Henderson, Alec S.
Replicating superspreader dynamics with compartmental models
title Replicating superspreader dynamics with compartmental models
title_full Replicating superspreader dynamics with compartmental models
title_fullStr Replicating superspreader dynamics with compartmental models
title_full_unstemmed Replicating superspreader dynamics with compartmental models
title_short Replicating superspreader dynamics with compartmental models
title_sort replicating superspreader dynamics with compartmental models
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10504364/
https://www.ncbi.nlm.nih.gov/pubmed/37714942
http://dx.doi.org/10.1038/s41598-023-42567-3
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