Minmers are a generalization of minimizers that enable unbiased local Jaccard estimation

MOTIVATION: The Jaccard similarity on k-mer sets has shown to be a convenient proxy for sequence identity. By avoiding expensive base-level alignments and comparing reduced sequence representations, tools such as MashMap can scale to massive numbers of pairwise comparisons while still providing usef...

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Detalles Bibliográficos
Autores principales: Kille, Bryce, Garrison, Erik, Treangen, Todd J, Phillippy, Adam M
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Original Paper
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10505501/
https://www.ncbi.nlm.nih.gov/pubmed/37603771
http://dx.doi.org/10.1093/bioinformatics/btad512

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10505501/
https://www.ncbi.nlm.nih.gov/pubmed/37603771
http://dx.doi.org/10.1093/bioinformatics/btad512

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