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Untargeted plasma metabolome identifies biomarkers in patients with extracranial arteriovenous malformations
Objective: This study aimed to investigate the plasma metabolic profile of patients with extracranial arteriovenous malformations (AVM). Method: Plasma samples were collected from 32 AVM patients and 30 healthy controls (HC). Ultra-high performance liquid chromatography-mass spectrometry (UHPLC-MS)...
Autores principales: | , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10505742/ https://www.ncbi.nlm.nih.gov/pubmed/37727659 http://dx.doi.org/10.3389/fphys.2023.1207390 |
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author | Fan, Xueqiang Gao, Xixi Deng, Yisen Ma, Bo Liu, Jingwen Zhang, Zhaohua Zhang, Dingkai Yang, Yuguang Wang, Cheng He, Bin Nie, Qiangqiang Ye, Zhidong Liu, Peng Wen, Jianyan |
author_facet | Fan, Xueqiang Gao, Xixi Deng, Yisen Ma, Bo Liu, Jingwen Zhang, Zhaohua Zhang, Dingkai Yang, Yuguang Wang, Cheng He, Bin Nie, Qiangqiang Ye, Zhidong Liu, Peng Wen, Jianyan |
author_sort | Fan, Xueqiang |
collection | PubMed |
description | Objective: This study aimed to investigate the plasma metabolic profile of patients with extracranial arteriovenous malformations (AVM). Method: Plasma samples were collected from 32 AVM patients and 30 healthy controls (HC). Ultra-high performance liquid chromatography-mass spectrometry (UHPLC-MS) was employed to analyze the metabolic profiles of both groups. Metabolic pathway enrichment analysis was performed through Kyoto Encyclopedia of Genes and Genomes (KEGG) database and MetaboAnalyst. Additionally, machine learning algorithms such as Least Absolute Shrinkage and Selection Operator (LASSO) and random forest (RF) were conducted to screen characteristic metabolites. The effectiveness of the serum biomarkers for AVM was evaluated using a receiver-operating characteristics (ROC) curve. Result: In total, 184 differential metabolites were screened in this study, with 110 metabolites in positive ion mode and 74 metabolites in negative mode. Lipids and lipid-like molecules were the predominant metabolites detected in both positive and negative ion modes. Several significant metabolic pathways were enriched in AVMs, including lipid metabolism, amino acid metabolism, carbohydrate metabolism, and protein translation. Through machine learning algorithms, nine metabolites were identify as characteristic metabolites, including hydroxy-proline, L-2-Amino-4-methylenepentanedioic acid, piperettine, 20-hydroxy-PGF2a, 2,2,4,4-tetramethyl-6-(1-oxobutyl)-1,3,5-cyclohexanetrione, DL-tryptophan, 9-oxoODE, alpha-Linolenic acid, and dihydrojasmonic acid. Conclusion: Patients with extracranial AVMs exhibited significantly altered metabolic patterns compared to healthy controls, which could be identified using plasma metabolomics. These findings suggest that metabolomic profiling can aid in the understanding of AVM pathophysiology and potentially inform clinical diagnosis and treatment. |
format | Online Article Text |
id | pubmed-10505742 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-105057422023-09-19 Untargeted plasma metabolome identifies biomarkers in patients with extracranial arteriovenous malformations Fan, Xueqiang Gao, Xixi Deng, Yisen Ma, Bo Liu, Jingwen Zhang, Zhaohua Zhang, Dingkai Yang, Yuguang Wang, Cheng He, Bin Nie, Qiangqiang Ye, Zhidong Liu, Peng Wen, Jianyan Front Physiol Physiology Objective: This study aimed to investigate the plasma metabolic profile of patients with extracranial arteriovenous malformations (AVM). Method: Plasma samples were collected from 32 AVM patients and 30 healthy controls (HC). Ultra-high performance liquid chromatography-mass spectrometry (UHPLC-MS) was employed to analyze the metabolic profiles of both groups. Metabolic pathway enrichment analysis was performed through Kyoto Encyclopedia of Genes and Genomes (KEGG) database and MetaboAnalyst. Additionally, machine learning algorithms such as Least Absolute Shrinkage and Selection Operator (LASSO) and random forest (RF) were conducted to screen characteristic metabolites. The effectiveness of the serum biomarkers for AVM was evaluated using a receiver-operating characteristics (ROC) curve. Result: In total, 184 differential metabolites were screened in this study, with 110 metabolites in positive ion mode and 74 metabolites in negative mode. Lipids and lipid-like molecules were the predominant metabolites detected in both positive and negative ion modes. Several significant metabolic pathways were enriched in AVMs, including lipid metabolism, amino acid metabolism, carbohydrate metabolism, and protein translation. Through machine learning algorithms, nine metabolites were identify as characteristic metabolites, including hydroxy-proline, L-2-Amino-4-methylenepentanedioic acid, piperettine, 20-hydroxy-PGF2a, 2,2,4,4-tetramethyl-6-(1-oxobutyl)-1,3,5-cyclohexanetrione, DL-tryptophan, 9-oxoODE, alpha-Linolenic acid, and dihydrojasmonic acid. Conclusion: Patients with extracranial AVMs exhibited significantly altered metabolic patterns compared to healthy controls, which could be identified using plasma metabolomics. These findings suggest that metabolomic profiling can aid in the understanding of AVM pathophysiology and potentially inform clinical diagnosis and treatment. Frontiers Media S.A. 2023-09-01 /pmc/articles/PMC10505742/ /pubmed/37727659 http://dx.doi.org/10.3389/fphys.2023.1207390 Text en Copyright © 2023 Fan, Gao, Deng, Ma, Liu, Zhang, Zhang, Yang, Wang, He, Nie, Ye, Liu and Wen. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Physiology Fan, Xueqiang Gao, Xixi Deng, Yisen Ma, Bo Liu, Jingwen Zhang, Zhaohua Zhang, Dingkai Yang, Yuguang Wang, Cheng He, Bin Nie, Qiangqiang Ye, Zhidong Liu, Peng Wen, Jianyan Untargeted plasma metabolome identifies biomarkers in patients with extracranial arteriovenous malformations |
title | Untargeted plasma metabolome identifies biomarkers in patients with extracranial arteriovenous malformations |
title_full | Untargeted plasma metabolome identifies biomarkers in patients with extracranial arteriovenous malformations |
title_fullStr | Untargeted plasma metabolome identifies biomarkers in patients with extracranial arteriovenous malformations |
title_full_unstemmed | Untargeted plasma metabolome identifies biomarkers in patients with extracranial arteriovenous malformations |
title_short | Untargeted plasma metabolome identifies biomarkers in patients with extracranial arteriovenous malformations |
title_sort | untargeted plasma metabolome identifies biomarkers in patients with extracranial arteriovenous malformations |
topic | Physiology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10505742/ https://www.ncbi.nlm.nih.gov/pubmed/37727659 http://dx.doi.org/10.3389/fphys.2023.1207390 |
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