Cargando…

Untargeted plasma metabolome identifies biomarkers in patients with extracranial arteriovenous malformations

Objective: This study aimed to investigate the plasma metabolic profile of patients with extracranial arteriovenous malformations (AVM). Method: Plasma samples were collected from 32 AVM patients and 30 healthy controls (HC). Ultra-high performance liquid chromatography-mass spectrometry (UHPLC-MS)...

Descripción completa

Detalles Bibliográficos
Autores principales: Fan, Xueqiang, Gao, Xixi, Deng, Yisen, Ma, Bo, Liu, Jingwen, Zhang, Zhaohua, Zhang, Dingkai, Yang, Yuguang, Wang, Cheng, He, Bin, Nie, Qiangqiang, Ye, Zhidong, Liu, Peng, Wen, Jianyan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10505742/
https://www.ncbi.nlm.nih.gov/pubmed/37727659
http://dx.doi.org/10.3389/fphys.2023.1207390
_version_ 1785106968609816576
author Fan, Xueqiang
Gao, Xixi
Deng, Yisen
Ma, Bo
Liu, Jingwen
Zhang, Zhaohua
Zhang, Dingkai
Yang, Yuguang
Wang, Cheng
He, Bin
Nie, Qiangqiang
Ye, Zhidong
Liu, Peng
Wen, Jianyan
author_facet Fan, Xueqiang
Gao, Xixi
Deng, Yisen
Ma, Bo
Liu, Jingwen
Zhang, Zhaohua
Zhang, Dingkai
Yang, Yuguang
Wang, Cheng
He, Bin
Nie, Qiangqiang
Ye, Zhidong
Liu, Peng
Wen, Jianyan
author_sort Fan, Xueqiang
collection PubMed
description Objective: This study aimed to investigate the plasma metabolic profile of patients with extracranial arteriovenous malformations (AVM). Method: Plasma samples were collected from 32 AVM patients and 30 healthy controls (HC). Ultra-high performance liquid chromatography-mass spectrometry (UHPLC-MS) was employed to analyze the metabolic profiles of both groups. Metabolic pathway enrichment analysis was performed through Kyoto Encyclopedia of Genes and Genomes (KEGG) database and MetaboAnalyst. Additionally, machine learning algorithms such as Least Absolute Shrinkage and Selection Operator (LASSO) and random forest (RF) were conducted to screen characteristic metabolites. The effectiveness of the serum biomarkers for AVM was evaluated using a receiver-operating characteristics (ROC) curve. Result: In total, 184 differential metabolites were screened in this study, with 110 metabolites in positive ion mode and 74 metabolites in negative mode. Lipids and lipid-like molecules were the predominant metabolites detected in both positive and negative ion modes. Several significant metabolic pathways were enriched in AVMs, including lipid metabolism, amino acid metabolism, carbohydrate metabolism, and protein translation. Through machine learning algorithms, nine metabolites were identify as characteristic metabolites, including hydroxy-proline, L-2-Amino-4-methylenepentanedioic acid, piperettine, 20-hydroxy-PGF2a, 2,2,4,4-tetramethyl-6-(1-oxobutyl)-1,3,5-cyclohexanetrione, DL-tryptophan, 9-oxoODE, alpha-Linolenic acid, and dihydrojasmonic acid. Conclusion: Patients with extracranial AVMs exhibited significantly altered metabolic patterns compared to healthy controls, which could be identified using plasma metabolomics. These findings suggest that metabolomic profiling can aid in the understanding of AVM pathophysiology and potentially inform clinical diagnosis and treatment.
format Online
Article
Text
id pubmed-10505742
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-105057422023-09-19 Untargeted plasma metabolome identifies biomarkers in patients with extracranial arteriovenous malformations Fan, Xueqiang Gao, Xixi Deng, Yisen Ma, Bo Liu, Jingwen Zhang, Zhaohua Zhang, Dingkai Yang, Yuguang Wang, Cheng He, Bin Nie, Qiangqiang Ye, Zhidong Liu, Peng Wen, Jianyan Front Physiol Physiology Objective: This study aimed to investigate the plasma metabolic profile of patients with extracranial arteriovenous malformations (AVM). Method: Plasma samples were collected from 32 AVM patients and 30 healthy controls (HC). Ultra-high performance liquid chromatography-mass spectrometry (UHPLC-MS) was employed to analyze the metabolic profiles of both groups. Metabolic pathway enrichment analysis was performed through Kyoto Encyclopedia of Genes and Genomes (KEGG) database and MetaboAnalyst. Additionally, machine learning algorithms such as Least Absolute Shrinkage and Selection Operator (LASSO) and random forest (RF) were conducted to screen characteristic metabolites. The effectiveness of the serum biomarkers for AVM was evaluated using a receiver-operating characteristics (ROC) curve. Result: In total, 184 differential metabolites were screened in this study, with 110 metabolites in positive ion mode and 74 metabolites in negative mode. Lipids and lipid-like molecules were the predominant metabolites detected in both positive and negative ion modes. Several significant metabolic pathways were enriched in AVMs, including lipid metabolism, amino acid metabolism, carbohydrate metabolism, and protein translation. Through machine learning algorithms, nine metabolites were identify as characteristic metabolites, including hydroxy-proline, L-2-Amino-4-methylenepentanedioic acid, piperettine, 20-hydroxy-PGF2a, 2,2,4,4-tetramethyl-6-(1-oxobutyl)-1,3,5-cyclohexanetrione, DL-tryptophan, 9-oxoODE, alpha-Linolenic acid, and dihydrojasmonic acid. Conclusion: Patients with extracranial AVMs exhibited significantly altered metabolic patterns compared to healthy controls, which could be identified using plasma metabolomics. These findings suggest that metabolomic profiling can aid in the understanding of AVM pathophysiology and potentially inform clinical diagnosis and treatment. Frontiers Media S.A. 2023-09-01 /pmc/articles/PMC10505742/ /pubmed/37727659 http://dx.doi.org/10.3389/fphys.2023.1207390 Text en Copyright © 2023 Fan, Gao, Deng, Ma, Liu, Zhang, Zhang, Yang, Wang, He, Nie, Ye, Liu and Wen. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Physiology
Fan, Xueqiang
Gao, Xixi
Deng, Yisen
Ma, Bo
Liu, Jingwen
Zhang, Zhaohua
Zhang, Dingkai
Yang, Yuguang
Wang, Cheng
He, Bin
Nie, Qiangqiang
Ye, Zhidong
Liu, Peng
Wen, Jianyan
Untargeted plasma metabolome identifies biomarkers in patients with extracranial arteriovenous malformations
title Untargeted plasma metabolome identifies biomarkers in patients with extracranial arteriovenous malformations
title_full Untargeted plasma metabolome identifies biomarkers in patients with extracranial arteriovenous malformations
title_fullStr Untargeted plasma metabolome identifies biomarkers in patients with extracranial arteriovenous malformations
title_full_unstemmed Untargeted plasma metabolome identifies biomarkers in patients with extracranial arteriovenous malformations
title_short Untargeted plasma metabolome identifies biomarkers in patients with extracranial arteriovenous malformations
title_sort untargeted plasma metabolome identifies biomarkers in patients with extracranial arteriovenous malformations
topic Physiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10505742/
https://www.ncbi.nlm.nih.gov/pubmed/37727659
http://dx.doi.org/10.3389/fphys.2023.1207390
work_keys_str_mv AT fanxueqiang untargetedplasmametabolomeidentifiesbiomarkersinpatientswithextracranialarteriovenousmalformations
AT gaoxixi untargetedplasmametabolomeidentifiesbiomarkersinpatientswithextracranialarteriovenousmalformations
AT dengyisen untargetedplasmametabolomeidentifiesbiomarkersinpatientswithextracranialarteriovenousmalformations
AT mabo untargetedplasmametabolomeidentifiesbiomarkersinpatientswithextracranialarteriovenousmalformations
AT liujingwen untargetedplasmametabolomeidentifiesbiomarkersinpatientswithextracranialarteriovenousmalformations
AT zhangzhaohua untargetedplasmametabolomeidentifiesbiomarkersinpatientswithextracranialarteriovenousmalformations
AT zhangdingkai untargetedplasmametabolomeidentifiesbiomarkersinpatientswithextracranialarteriovenousmalformations
AT yangyuguang untargetedplasmametabolomeidentifiesbiomarkersinpatientswithextracranialarteriovenousmalformations
AT wangcheng untargetedplasmametabolomeidentifiesbiomarkersinpatientswithextracranialarteriovenousmalformations
AT hebin untargetedplasmametabolomeidentifiesbiomarkersinpatientswithextracranialarteriovenousmalformations
AT nieqiangqiang untargetedplasmametabolomeidentifiesbiomarkersinpatientswithextracranialarteriovenousmalformations
AT yezhidong untargetedplasmametabolomeidentifiesbiomarkersinpatientswithextracranialarteriovenousmalformations
AT liupeng untargetedplasmametabolomeidentifiesbiomarkersinpatientswithextracranialarteriovenousmalformations
AT wenjianyan untargetedplasmametabolomeidentifiesbiomarkersinpatientswithextracranialarteriovenousmalformations