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Available cloned genes and markers for genetic improvement of biotic stress resistance in rice

Biotic stress is one of the major threats to stable rice production. Climate change affects the shifting of pest outbreaks in time and space. Genetic improvement of biotic stress resistance in rice is a cost-effective and environment-friendly way to control diseases and pests compared to other metho...

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Autores principales: Simon, Eliza Vie, Hechanova, Sherry Lou, Hernandez, Jose E., Li, Charng-Pei, Tülek, Adnan, Ahn, Eok-Keun, Jairin, Jirapong, Choi, Il-Ryong, Sundaram, Raman M., Jena, Kshirod K., Kim, Sung-Ryul
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10507716/
https://www.ncbi.nlm.nih.gov/pubmed/37731986
http://dx.doi.org/10.3389/fpls.2023.1247014
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author Simon, Eliza Vie
Hechanova, Sherry Lou
Hernandez, Jose E.
Li, Charng-Pei
Tülek, Adnan
Ahn, Eok-Keun
Jairin, Jirapong
Choi, Il-Ryong
Sundaram, Raman M.
Jena, Kshirod K.
Kim, Sung-Ryul
author_facet Simon, Eliza Vie
Hechanova, Sherry Lou
Hernandez, Jose E.
Li, Charng-Pei
Tülek, Adnan
Ahn, Eok-Keun
Jairin, Jirapong
Choi, Il-Ryong
Sundaram, Raman M.
Jena, Kshirod K.
Kim, Sung-Ryul
author_sort Simon, Eliza Vie
collection PubMed
description Biotic stress is one of the major threats to stable rice production. Climate change affects the shifting of pest outbreaks in time and space. Genetic improvement of biotic stress resistance in rice is a cost-effective and environment-friendly way to control diseases and pests compared to other methods such as chemical spraying. Fast deployment of the available and suitable genes/alleles in local elite varieties through marker-assisted selection (MAS) is crucial for stable high-yield rice production. In this review, we focused on consolidating all the available cloned genes/alleles conferring resistance against rice pathogens (virus, bacteria, and fungus) and insect pests, the corresponding donor materials, and the DNA markers linked to the identified genes. To date, 48 genes (independent loci) have been cloned for only major biotic stresses: seven genes for brown planthopper (BPH), 23 for blast, 13 for bacterial blight, and five for viruses. Physical locations of the 48 genes were graphically mapped on the 12 rice chromosomes so that breeders can easily find the locations of the target genes and distances among all the biotic stress resistance genes and any other target trait genes. For efficient use of the cloned genes, we collected all the publically available DNA markers (~500 markers) linked to the identified genes. In case of no available cloned genes yet for the other biotic stresses, we provided brief information such as donor germplasm, quantitative trait loci (QTLs), and the related papers. All the information described in this review can contribute to the fast genetic improvement of biotic stress resistance in rice for stable high-yield rice production.
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spelling pubmed-105077162023-09-20 Available cloned genes and markers for genetic improvement of biotic stress resistance in rice Simon, Eliza Vie Hechanova, Sherry Lou Hernandez, Jose E. Li, Charng-Pei Tülek, Adnan Ahn, Eok-Keun Jairin, Jirapong Choi, Il-Ryong Sundaram, Raman M. Jena, Kshirod K. Kim, Sung-Ryul Front Plant Sci Plant Science Biotic stress is one of the major threats to stable rice production. Climate change affects the shifting of pest outbreaks in time and space. Genetic improvement of biotic stress resistance in rice is a cost-effective and environment-friendly way to control diseases and pests compared to other methods such as chemical spraying. Fast deployment of the available and suitable genes/alleles in local elite varieties through marker-assisted selection (MAS) is crucial for stable high-yield rice production. In this review, we focused on consolidating all the available cloned genes/alleles conferring resistance against rice pathogens (virus, bacteria, and fungus) and insect pests, the corresponding donor materials, and the DNA markers linked to the identified genes. To date, 48 genes (independent loci) have been cloned for only major biotic stresses: seven genes for brown planthopper (BPH), 23 for blast, 13 for bacterial blight, and five for viruses. Physical locations of the 48 genes were graphically mapped on the 12 rice chromosomes so that breeders can easily find the locations of the target genes and distances among all the biotic stress resistance genes and any other target trait genes. For efficient use of the cloned genes, we collected all the publically available DNA markers (~500 markers) linked to the identified genes. In case of no available cloned genes yet for the other biotic stresses, we provided brief information such as donor germplasm, quantitative trait loci (QTLs), and the related papers. All the information described in this review can contribute to the fast genetic improvement of biotic stress resistance in rice for stable high-yield rice production. Frontiers Media S.A. 2023-09-05 /pmc/articles/PMC10507716/ /pubmed/37731986 http://dx.doi.org/10.3389/fpls.2023.1247014 Text en Copyright © 2023 Simon, Hechanova, Hernandez, Li, Tülek, Ahn, Jairin, Choi, Sundaram, Jena and Kim https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Plant Science
Simon, Eliza Vie
Hechanova, Sherry Lou
Hernandez, Jose E.
Li, Charng-Pei
Tülek, Adnan
Ahn, Eok-Keun
Jairin, Jirapong
Choi, Il-Ryong
Sundaram, Raman M.
Jena, Kshirod K.
Kim, Sung-Ryul
Available cloned genes and markers for genetic improvement of biotic stress resistance in rice
title Available cloned genes and markers for genetic improvement of biotic stress resistance in rice
title_full Available cloned genes and markers for genetic improvement of biotic stress resistance in rice
title_fullStr Available cloned genes and markers for genetic improvement of biotic stress resistance in rice
title_full_unstemmed Available cloned genes and markers for genetic improvement of biotic stress resistance in rice
title_short Available cloned genes and markers for genetic improvement of biotic stress resistance in rice
title_sort available cloned genes and markers for genetic improvement of biotic stress resistance in rice
topic Plant Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10507716/
https://www.ncbi.nlm.nih.gov/pubmed/37731986
http://dx.doi.org/10.3389/fpls.2023.1247014
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