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Selecting cardiac magnetic resonance images suitable for annotation of pulmonary arteries using an active-learning based deep learning model

An increasing and aging patient population poses a growing burden on healthcare professionals. Automation of medical imaging diagnostics holds promise for enhancing patient care and reducing manpower required to accommodate an increasing patient-population. Deep learning, a subset of machine learnin...

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Autores principales: van der Veen, Werner, Benjamins, Jan-Walter, Yeung, Ming Wai, van der Harst, Pim
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10509220/
https://www.ncbi.nlm.nih.gov/pubmed/37726318
http://dx.doi.org/10.1038/s41598-023-41228-9
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author van der Veen, Werner
Benjamins, Jan-Walter
Yeung, Ming Wai
van der Harst, Pim
author_facet van der Veen, Werner
Benjamins, Jan-Walter
Yeung, Ming Wai
van der Harst, Pim
author_sort van der Veen, Werner
collection PubMed
description An increasing and aging patient population poses a growing burden on healthcare professionals. Automation of medical imaging diagnostics holds promise for enhancing patient care and reducing manpower required to accommodate an increasing patient-population. Deep learning, a subset of machine learning, has the potential to facilitate automated diagnostics, but commonly requires large-scaled labeled datasets. In medical domains, data is often abundant but labeling is a laborious and costly task. Active learning provides a method to optimize the selection of unlabeled samples that are most suitable for improvement of the model and incorporate them into the model training process. This approach proves beneficial when only a small number of labeled samples are available. Various selection methods currently exist, but most of them employ fixed querying schedules. There is limited research on how the timing of a query can impact performance in relation to the number of queried samples. This paper proposes a novel approach called dynamic querying, which aims to optimize the timing of queries to enhance model development while utilizing as few labeled images as possible. The performance of the proposed model is compared to a model trained utilizing a fully-supervised training method, and its effectiveness is assessed based on dataset size requirements and loss rates. Dynamic querying demonstrates a considerably faster learning curve in relation to the number of labeled samples used, achieving an accuracy of 70% using only 24 samples, compared to 82% for a fully-supervised model trained on the complete training dataset of 1017 images.
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spelling pubmed-105092202023-09-21 Selecting cardiac magnetic resonance images suitable for annotation of pulmonary arteries using an active-learning based deep learning model van der Veen, Werner Benjamins, Jan-Walter Yeung, Ming Wai van der Harst, Pim Sci Rep Article An increasing and aging patient population poses a growing burden on healthcare professionals. Automation of medical imaging diagnostics holds promise for enhancing patient care and reducing manpower required to accommodate an increasing patient-population. Deep learning, a subset of machine learning, has the potential to facilitate automated diagnostics, but commonly requires large-scaled labeled datasets. In medical domains, data is often abundant but labeling is a laborious and costly task. Active learning provides a method to optimize the selection of unlabeled samples that are most suitable for improvement of the model and incorporate them into the model training process. This approach proves beneficial when only a small number of labeled samples are available. Various selection methods currently exist, but most of them employ fixed querying schedules. There is limited research on how the timing of a query can impact performance in relation to the number of queried samples. This paper proposes a novel approach called dynamic querying, which aims to optimize the timing of queries to enhance model development while utilizing as few labeled images as possible. The performance of the proposed model is compared to a model trained utilizing a fully-supervised training method, and its effectiveness is assessed based on dataset size requirements and loss rates. Dynamic querying demonstrates a considerably faster learning curve in relation to the number of labeled samples used, achieving an accuracy of 70% using only 24 samples, compared to 82% for a fully-supervised model trained on the complete training dataset of 1017 images. Nature Publishing Group UK 2023-09-19 /pmc/articles/PMC10509220/ /pubmed/37726318 http://dx.doi.org/10.1038/s41598-023-41228-9 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
van der Veen, Werner
Benjamins, Jan-Walter
Yeung, Ming Wai
van der Harst, Pim
Selecting cardiac magnetic resonance images suitable for annotation of pulmonary arteries using an active-learning based deep learning model
title Selecting cardiac magnetic resonance images suitable for annotation of pulmonary arteries using an active-learning based deep learning model
title_full Selecting cardiac magnetic resonance images suitable for annotation of pulmonary arteries using an active-learning based deep learning model
title_fullStr Selecting cardiac magnetic resonance images suitable for annotation of pulmonary arteries using an active-learning based deep learning model
title_full_unstemmed Selecting cardiac magnetic resonance images suitable for annotation of pulmonary arteries using an active-learning based deep learning model
title_short Selecting cardiac magnetic resonance images suitable for annotation of pulmonary arteries using an active-learning based deep learning model
title_sort selecting cardiac magnetic resonance images suitable for annotation of pulmonary arteries using an active-learning based deep learning model
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10509220/
https://www.ncbi.nlm.nih.gov/pubmed/37726318
http://dx.doi.org/10.1038/s41598-023-41228-9
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