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The spectral underpinnings of pathogen spread on animal networks

Predicting what factors promote or protect populations from infectious disease is a fundamental epidemiological challenge. Social networks, where nodes represent hosts and edges represent direct or indirect contacts between them, are important in quantifying these aspects of infectious disease dynam...

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Autores principales: Fountain-Jones, Nicholas M., Silk, Mathew, Appaw, Raima Carol, Hamede, Rodrigo, Rushmore, Julie, VanderWaal, Kimberly, Craft, Meggan E., Carver, Scott, Charleston, Michael
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Royal Society 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10509581/
https://www.ncbi.nlm.nih.gov/pubmed/37727089
http://dx.doi.org/10.1098/rspb.2023.0951
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author Fountain-Jones, Nicholas M.
Silk, Mathew
Appaw, Raima Carol
Hamede, Rodrigo
Rushmore, Julie
VanderWaal, Kimberly
Craft, Meggan E.
Carver, Scott
Charleston, Michael
author_facet Fountain-Jones, Nicholas M.
Silk, Mathew
Appaw, Raima Carol
Hamede, Rodrigo
Rushmore, Julie
VanderWaal, Kimberly
Craft, Meggan E.
Carver, Scott
Charleston, Michael
author_sort Fountain-Jones, Nicholas M.
collection PubMed
description Predicting what factors promote or protect populations from infectious disease is a fundamental epidemiological challenge. Social networks, where nodes represent hosts and edges represent direct or indirect contacts between them, are important in quantifying these aspects of infectious disease dynamics. However, how network structure and epidemic parameters interact in empirical networks to promote or protect animal populations from infectious disease remains a challenge. Here we draw on advances in spectral graph theory and machine learning to build predictive models of pathogen spread on a large collection of empirical networks from across the animal kingdom. We show that the spectral features of an animal network are powerful predictors of pathogen spread for a variety of hosts and pathogens and can be a valuable proxy for the vulnerability of animal networks to pathogen spread. We validate our findings using interpretable machine learning techniques and provide a flexible web application for animal health practitioners to assess the vulnerability of a particular network to pathogen spread.
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spelling pubmed-105095812023-09-21 The spectral underpinnings of pathogen spread on animal networks Fountain-Jones, Nicholas M. Silk, Mathew Appaw, Raima Carol Hamede, Rodrigo Rushmore, Julie VanderWaal, Kimberly Craft, Meggan E. Carver, Scott Charleston, Michael Proc Biol Sci Ecology Predicting what factors promote or protect populations from infectious disease is a fundamental epidemiological challenge. Social networks, where nodes represent hosts and edges represent direct or indirect contacts between them, are important in quantifying these aspects of infectious disease dynamics. However, how network structure and epidemic parameters interact in empirical networks to promote or protect animal populations from infectious disease remains a challenge. Here we draw on advances in spectral graph theory and machine learning to build predictive models of pathogen spread on a large collection of empirical networks from across the animal kingdom. We show that the spectral features of an animal network are powerful predictors of pathogen spread for a variety of hosts and pathogens and can be a valuable proxy for the vulnerability of animal networks to pathogen spread. We validate our findings using interpretable machine learning techniques and provide a flexible web application for animal health practitioners to assess the vulnerability of a particular network to pathogen spread. The Royal Society 2023-09-20 /pmc/articles/PMC10509581/ /pubmed/37727089 http://dx.doi.org/10.1098/rspb.2023.0951 Text en © 2023 The Authors. https://creativecommons.org/licenses/by/4.0/Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, provided the original author and source are credited.
spellingShingle Ecology
Fountain-Jones, Nicholas M.
Silk, Mathew
Appaw, Raima Carol
Hamede, Rodrigo
Rushmore, Julie
VanderWaal, Kimberly
Craft, Meggan E.
Carver, Scott
Charleston, Michael
The spectral underpinnings of pathogen spread on animal networks
title The spectral underpinnings of pathogen spread on animal networks
title_full The spectral underpinnings of pathogen spread on animal networks
title_fullStr The spectral underpinnings of pathogen spread on animal networks
title_full_unstemmed The spectral underpinnings of pathogen spread on animal networks
title_short The spectral underpinnings of pathogen spread on animal networks
title_sort spectral underpinnings of pathogen spread on animal networks
topic Ecology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10509581/
https://www.ncbi.nlm.nih.gov/pubmed/37727089
http://dx.doi.org/10.1098/rspb.2023.0951
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