Cargando…

singleCellBase: a high-quality manually curated database of cell markers for single cell annotation across multiple species

Annotating cells in the analysis of single-cell RNA-seq (scRNA-seq) data is one of the most challenging tasks that researchers are actively addressing. Manual cell annotation is generally considered the gold standard method, although it is labor intensive and independent of prior knowledge. At prese...

Descripción completa

Detalles Bibliográficos
Autores principales:	Meng, Fan-Lin, Huang, Xiao-Ling, Qin, Wen-Yan, Liu, Kun-Bang, Wang, Yan, Li, Ming, Ren, Yong-Hong, Li, Yan-Ze, Sun, Yi-Min
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2023
Materias:	Correspondence
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10510128/ https://www.ncbi.nlm.nih.gov/pubmed/37730627 http://dx.doi.org/10.1186/s40364-023-00523-3

Ejemplares similares

CITEdb: a manually curated database of cell–cell interactions in human
por: Shan, Nayang, et al.
Publicado: (2022)

CellMarker: a manually curated resource of cell markers in human and mouse
por: Zhang, Xinxin, et al.
Publicado: (2019)

SC2disease: a manually curated database of single-cell transcriptome for human diseases
por: Zhao, Tianyi, et al.
Publicado: (2020)

circRNA disease: a manually curated database of experimentally supported circRNA-disease associations
por: Zhao, Zheng, et al.
Publicado: (2018)

TF-Marker: a comprehensive manually curated database for transcription factors and related markers in specific cell and tissue types in human
por: Xu, Mingcong, et al.
Publicado: (2021)

A curated database reveals trends in single-cell transcriptomics
por: Svensson, Valentine, et al.
Publicado: (2020)

Linked annotations: a middle ground for manual curation of biomedical databases and text corpora
por: Goldberg, Tatyana, et al.
Publicado: (2015)

CyanoBase and RhizoBase: databases of manually curated annotations for cyanobacterial and rhizobial genomes
por: Fujisawa, Takatomo, et al.
Publicado: (2014)

CellMarker 2.0: an updated database of manually curated cell markers in human/mouse and web tools based on scRNA-seq data
por: Hu, Congxue, et al.
Publicado: (2022)

Correction to: CITEdb: a manually curated database of cell–cell interactions in human
Publicado: (2023)

ODNA: a manually curated database of noncoding RNAs associated with orthopedics
por: You, Changcheng, et al.
Publicado: (2019)

CCIDB: a manually curated cell–cell interaction database with cell context information
por: Noh, Jin Young, et al.
Publicado: (2023)

Functional profiling of stage-specific proteome and translational transition across human pre-implantation embryo development at a single-cell resolution
por: Dang, Yujiao, et al.
Publicado: (2023)

CYTOCON: The manually curated database of human in vivo cell and molecule concentrations
por: Leonov, Vladislav, et al.
Publicado: (2022)

scMRMA: single cell multiresolution marker-based annotation
por: Li, Jia, et al.
Publicado: (2021)

dbGSRV: A manually curated database of genetic susceptibility to respiratory virus
por: Li, Ping, et al.
Publicado: (2022)

Manually curated database of rice proteins
por: Gour, Pratibha, et al.
Publicado: (2014)

Estimating the annotation error rate of curated GO database sequence annotations
por: Jones, Craig E, et al.
Publicado: (2007)

Single-cell transcriptome analysis reveals stem cell-like subsets in the progression of Waldenström’s macroglobulinemia
por: Qiu, Yu, et al.
Publicado: (2023)

Bi-directional differentiation of single bronchioalveolar stem cells during lung repair
por: Liu, Kuo, et al.
Publicado: (2020)

DIDA: A curated and annotated digenic diseases database
por: Gazzo, Andrea M., et al.
Publicado: (2016)

Construction of a web-based nanomaterial database by big data curation and modeling friendly nanostructure annotations
por: Yan, Xiliang, et al.
Publicado: (2020)

ParaDB: A manually curated database containing genomic annotation for the human pathogenic fungi Paracoccidioides spp.
por: Aciole Barbosa, David, et al.
Publicado: (2019)

A single-center retrospective long-term analysis of 80 cases of ovarian Sertoli-Leydig cell tumors
por: Yang, Ni, et al.
Publicado: (2021)

Cuproptosis correlates with immunosuppressive tumor microenvironment based on pan-cancer multiomics and single-cell sequencing analysis
por: Qin, Yan, et al.
Publicado: (2023)

Application of single-cell sequencing in autoimmune diseases
por: Mi, Liang-Yu, et al.
Publicado: (2021)

GMrepo: a database of curated and consistently annotated human gut metagenomes
por: Wu, Sicheng, et al.
Publicado: (2020)

Strategies for annotation and curation of translational databases: the eTUMOUR project
por: Julià-Sapé, Margarida, et al.
Publicado: (2012)

Training a deep learning model for single-cell segmentation without manual annotation
por: Din, Nizam Ud, et al.
Publicado: (2021)

NDDVD: an integrated and manually curated Neurodegenerative Diseases Variation Database
por: Yang, Yang, et al.
Publicado: (2018)

A single-cell approach to engineer CD8+ T cells targeting cytomegalovirus
por: Wang, Fei, et al.
Publicado: (2020)

DAMPD: a manually curated antimicrobial peptide database
por: Seshadri Sundararajan, Vijayaraghava, et al.
Publicado: (2012)

PGMD: a comprehensive manually curated pharmacogenomic database
por: Kaplun, A, et al.
Publicado: (2016)

EasyCellType: marker-based cell-type annotation by automatically querying multiple databases
por: Li, Ruoxing, et al.
Publicado: (2023)

scEnhancer: a single-cell enhancer resource with annotation across hundreds of tissue/cell types in three species
por: Gao, Tianshun, et al.
Publicado: (2021)

CMBD: a manually curated cancer metabolic biomarker knowledge database
por: Chen, Jing, et al.
Publicado: (2021)

Automatic Cell Type Annotation Using Marker Genes for Single-Cell RNA Sequencing Data
por: Chen, Yu, et al.
Publicado: (2022)

Single-cell transcriptome profiling of the vaginal epithelium reveals the heterogeneity of suprabasal cells
por: Liang, Chen, et al.
Publicado: (2023)

Unsupervised cell functional annotation for single-cell RNA-seq
por: Li, Dongshunyi, et al.
Publicado: (2022)

The curation paradigm and application tool used for manual curation of the scientific literature at the Comparative Toxicogenomics Database
por: Davis, Allan Peter, et al.
Publicado: (2011)

Cannot write session to /tmp/vufind_sessions/sess_qcei0dg3779q8pv49snao61n27