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Characterization and Phylogenetic Analysis of a Novel GH43 β-Xylosidase From Neocallimastix californiae

Degradation of lignocellulosic materials to release fermentable mono- and disaccharides is a decisive step toward a sustainable bio-based economy, thereby increasing the demand of robust and highly active lignocellulolytic enzymes. Anaerobic fungi of the phylum Neocallimastigomycota are potent bioma...

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Autores principales: Stabel, Marcus, Hagemeister, Julia, Heck, Zacharias, Aliyu, Habibu, Ochsenreither, Katrin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10512374/
https://www.ncbi.nlm.nih.gov/pubmed/37744100
http://dx.doi.org/10.3389/ffunb.2021.692804
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author Stabel, Marcus
Hagemeister, Julia
Heck, Zacharias
Aliyu, Habibu
Ochsenreither, Katrin
author_facet Stabel, Marcus
Hagemeister, Julia
Heck, Zacharias
Aliyu, Habibu
Ochsenreither, Katrin
author_sort Stabel, Marcus
collection PubMed
description Degradation of lignocellulosic materials to release fermentable mono- and disaccharides is a decisive step toward a sustainable bio-based economy, thereby increasing the demand of robust and highly active lignocellulolytic enzymes. Anaerobic fungi of the phylum Neocallimastigomycota are potent biomass degraders harboring a huge variety of such enzymes. Compared to cellulose, hemicellulose degradation has received much less attention; therefore, the focus of this study has been the enzymatic xylan degradation of anaerobic fungi as these organisms produce some of the most effective known hydrolytic enzymes. We report the heterologous expression of a GH43 xylosidase, Xyl43Nc, and a GH11 endoxylanase, X11Nc, from the anaerobic fungus Neocallimastix californiae in Escherichia coli. The enzymes were identified by screening of the putative proteome. Xyl43Nc was highly active against 4-Nitrophenol-xylopyranosides with a K(m) of 0.72 mM, a k(cat) of 29.28 s(−1), a temperature optimum of 32°C and a pH optimum of 6. When combined, Xyl43Nc and X11Nc released xylose from beechwood xylan and arabinoxylan from wheat. Phylogenetic analysis revealed that Xyl43Nc shares common ancestry with enzymes from Spirochaetes and groups separately from Ascomycete sequences in our phylogeny, highlighting the importance of horizontal gene transfer in the evolution of the anaerobic fungi.
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spelling pubmed-105123742023-09-22 Characterization and Phylogenetic Analysis of a Novel GH43 β-Xylosidase From Neocallimastix californiae Stabel, Marcus Hagemeister, Julia Heck, Zacharias Aliyu, Habibu Ochsenreither, Katrin Front Fungal Biol Fungal Biology Degradation of lignocellulosic materials to release fermentable mono- and disaccharides is a decisive step toward a sustainable bio-based economy, thereby increasing the demand of robust and highly active lignocellulolytic enzymes. Anaerobic fungi of the phylum Neocallimastigomycota are potent biomass degraders harboring a huge variety of such enzymes. Compared to cellulose, hemicellulose degradation has received much less attention; therefore, the focus of this study has been the enzymatic xylan degradation of anaerobic fungi as these organisms produce some of the most effective known hydrolytic enzymes. We report the heterologous expression of a GH43 xylosidase, Xyl43Nc, and a GH11 endoxylanase, X11Nc, from the anaerobic fungus Neocallimastix californiae in Escherichia coli. The enzymes were identified by screening of the putative proteome. Xyl43Nc was highly active against 4-Nitrophenol-xylopyranosides with a K(m) of 0.72 mM, a k(cat) of 29.28 s(−1), a temperature optimum of 32°C and a pH optimum of 6. When combined, Xyl43Nc and X11Nc released xylose from beechwood xylan and arabinoxylan from wheat. Phylogenetic analysis revealed that Xyl43Nc shares common ancestry with enzymes from Spirochaetes and groups separately from Ascomycete sequences in our phylogeny, highlighting the importance of horizontal gene transfer in the evolution of the anaerobic fungi. Frontiers Media S.A. 2021-07-07 /pmc/articles/PMC10512374/ /pubmed/37744100 http://dx.doi.org/10.3389/ffunb.2021.692804 Text en Copyright © 2021 Stabel, Hagemeister, Heck, Aliyu and Ochsenreither. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Fungal Biology
Stabel, Marcus
Hagemeister, Julia
Heck, Zacharias
Aliyu, Habibu
Ochsenreither, Katrin
Characterization and Phylogenetic Analysis of a Novel GH43 β-Xylosidase From Neocallimastix californiae
title Characterization and Phylogenetic Analysis of a Novel GH43 β-Xylosidase From Neocallimastix californiae
title_full Characterization and Phylogenetic Analysis of a Novel GH43 β-Xylosidase From Neocallimastix californiae
title_fullStr Characterization and Phylogenetic Analysis of a Novel GH43 β-Xylosidase From Neocallimastix californiae
title_full_unstemmed Characterization and Phylogenetic Analysis of a Novel GH43 β-Xylosidase From Neocallimastix californiae
title_short Characterization and Phylogenetic Analysis of a Novel GH43 β-Xylosidase From Neocallimastix californiae
title_sort characterization and phylogenetic analysis of a novel gh43 β-xylosidase from neocallimastix californiae
topic Fungal Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10512374/
https://www.ncbi.nlm.nih.gov/pubmed/37744100
http://dx.doi.org/10.3389/ffunb.2021.692804
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