Characterization of the complete chloroplast genome of Cynanchum acutum subsp. sibiricum (Apocynaceae)

In this study, we assembled the complete chloroplast (cp) genome of Cynanchum acutum subsp. sibiricum using high-throughput Illumina sequencing reads. The resulting chloroplast genome assembly displayed a typical quadripartite structure with a total length of 158,283 bp, which contained a pair of in...

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Autores principales: Zhang, Erdong, Liu, Yi, Wang, Yan, Zhang, Xuedan, Wei, Yuqing, Zhang, Lei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2023
Materias:
Plastome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10512800/
https://www.ncbi.nlm.nih.gov/pubmed/37746032
http://dx.doi.org/10.1080/23802359.2023.2256496
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author Zhang, Erdong
Liu, Yi
Wang, Yan
Zhang, Xuedan
Wei, Yuqing
Zhang, Lei
author_facet Zhang, Erdong
Liu, Yi
Wang, Yan
Zhang, Xuedan
Wei, Yuqing
Zhang, Lei
author_sort Zhang, Erdong
collection PubMed
description In this study, we assembled the complete chloroplast (cp) genome of Cynanchum acutum subsp. sibiricum using high-throughput Illumina sequencing reads. The resulting chloroplast genome assembly displayed a typical quadripartite structure with a total length of 158,283 bp, which contained a pair of inverted repeat regions (IRs) of 24,459 bp. These two IRs were separated by a large single-copy region (LSC) and a small single-copy region (SSC) of 89,424 bp and 19,941 bp in length, respectively. The C. acutum subsp. sibiricum cp genome contained 130 genes, and its overall GC content was 37.87%. Phylogenetic analysis among C. acutum subsp. sibiricum and nine other Cynanchum species demonstrated that C. acutum subsp. sibiricum was closely related to C. chinense. The C. acutum subsp. sibiricum cp genome presented in this study lays a good foundation for further genetic and genomic studies of the Cynanchum as well as Apocynaceae.
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spelling pubmed-105128002023-09-22 Characterization of the complete chloroplast genome of Cynanchum acutum subsp. sibiricum (Apocynaceae) Zhang, Erdong Liu, Yi Wang, Yan Zhang, Xuedan Wei, Yuqing Zhang, Lei Mitochondrial DNA B Resour Plastome Announcement In this study, we assembled the complete chloroplast (cp) genome of Cynanchum acutum subsp. sibiricum using high-throughput Illumina sequencing reads. The resulting chloroplast genome assembly displayed a typical quadripartite structure with a total length of 158,283 bp, which contained a pair of inverted repeat regions (IRs) of 24,459 bp. These two IRs were separated by a large single-copy region (LSC) and a small single-copy region (SSC) of 89,424 bp and 19,941 bp in length, respectively. The C. acutum subsp. sibiricum cp genome contained 130 genes, and its overall GC content was 37.87%. Phylogenetic analysis among C. acutum subsp. sibiricum and nine other Cynanchum species demonstrated that C. acutum subsp. sibiricum was closely related to C. chinense. The C. acutum subsp. sibiricum cp genome presented in this study lays a good foundation for further genetic and genomic studies of the Cynanchum as well as Apocynaceae. Taylor & Francis 2023-09-19 /pmc/articles/PMC10512800/ /pubmed/37746032 http://dx.doi.org/10.1080/23802359.2023.2256496 Text en © 2023 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. The terms on which this article has been published allow the posting of the Accepted Manuscript in a repository by the author(s) or with their consent.
spellingShingle Plastome Announcement
Zhang, Erdong
Liu, Yi
Wang, Yan
Zhang, Xuedan
Wei, Yuqing
Zhang, Lei
Characterization of the complete chloroplast genome of Cynanchum acutum subsp. sibiricum (Apocynaceae)
title Characterization of the complete chloroplast genome of Cynanchum acutum subsp. sibiricum (Apocynaceae)
title_full Characterization of the complete chloroplast genome of Cynanchum acutum subsp. sibiricum (Apocynaceae)
title_fullStr Characterization of the complete chloroplast genome of Cynanchum acutum subsp. sibiricum (Apocynaceae)
title_full_unstemmed Characterization of the complete chloroplast genome of Cynanchum acutum subsp. sibiricum (Apocynaceae)
title_short Characterization of the complete chloroplast genome of Cynanchum acutum subsp. sibiricum (Apocynaceae)
title_sort characterization of the complete chloroplast genome of cynanchum acutum subsp. sibiricum (apocynaceae)
topic Plastome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10512800/
https://www.ncbi.nlm.nih.gov/pubmed/37746032
http://dx.doi.org/10.1080/23802359.2023.2256496
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