Cargando…

DeepSlice: rapid fully automatic registration of mouse brain imaging to a volumetric atlas

Registration of data to a common frame of reference is an essential step in the analysis and integration of diverse neuroscientific data. To this end, volumetric brain atlases enable histological datasets to be spatially registered and analyzed, yet accurate registration remains expertise-dependent...

Descripción completa

Detalles Bibliográficos
Autores principales:	Carey, Harry, Pegios, Michael, Martin, Lewis, Saleeba, Chris, Turner, Anita J., Everett, Nicholas A., Bjerke, Ingvild E., Puchades, Maja A., Bjaalie, Jan G., McMullan, Simon
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Nature Publishing Group UK 2023
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10514056/ https://www.ncbi.nlm.nih.gov/pubmed/37735467 http://dx.doi.org/10.1038/s41467-023-41645-4

Ejemplares similares

Database of literature derived cellular measurements from the murine basal ganglia
por: Bjerke, Ingvild E., et al.
Publicado: (2020)

Spatial registration of serial microscopic brain images to three-dimensional reference atlases with the QuickNII tool
por: Puchades, Maja A., et al.
Publicado: (2019)

Automatic Registration and Error Detection of Multiple Slices Using Landmarks
por: Frimmel, Hans, et al.
Publicado: (2001)

Scaling up cell-counting efforts in neuroscience through semi-automated methods
por: Bjerke, Ingvild Elise, et al.
Publicado: (2023)

Densities and numbers of calbindin and parvalbumin positive neurons across the rat and mouse brain
por: Bjerke, Ingvild E., et al.
Publicado: (2020)

Fully Automatic Registration Methods for Chest X-Ray Images
por: Lee, Yu-Ching, et al.
Publicado: (2021)

Mapping and Analysis of the Connectome of Sympathetic Premotor Neurons in the Rostral Ventrolateral Medulla of the Rat Using a Volumetric Brain Atlas
por: Dempsey, Bowen, et al.
Publicado: (2017)

Navigating the Murine Brain: Toward Best Practices for Determining and Documenting Neuroanatomical Locations in Experimental Studies
por: Bjerke, Ingvild E., et al.
Publicado: (2018)

Fully automatic and robust 3D registration of serial-section microscopic images
por: Wang, Ching-Wei, et al.
Publicado: (2015)

A neuroscientist’s guide to using murine brain atlases for efficient analysis and transparent reporting
por: Kleven, Heidi, et al.
Publicado: (2023)

A Student’s Guide to Neural Circuit Tracing
por: Saleeba, Christine, et al.
Publicado: (2019)

Corrigendum: A Student's Guide to Neural Circuit Tracing
por: Saleeba, Christine, et al.
Publicado: (2020)

Correction of misaligned slices in multi-slice cardiovascular magnetic resonance using slice-to-volume registration
por: Chandler, Adam G, et al.
Publicado: (2008)

Automatic assessment of glioma burden: a deep learning algorithm for fully automated volumetric and bidimensional measurement
por: Chang, Ken, et al.
Publicado: (2019)

Volumetric CT Texture Analysis of Intrahepatic Mass-Forming Cholangiocarcinoma for the Prediction of Postoperative Outcomes: Fully Automatic Tumor Segmentation Versus Semi-Automatic Segmentation
por: Park, Sungeun, et al.
Publicado: (2021)

A Combined Random Forests and Active Contour Model Approach for Fully Automatic Segmentation of the Left Atrium in Volumetric MRI
por: Ma, Chao, et al.
Publicado: (2017)

Personalized heterogeneous deformable model for fast volumetric registration
por: Si, Weixin, et al.
Publicado: (2017)

DeepMapi: a Fully Automatic Registration Method for Mesoscopic Optical Brain Images Using Convolutional Neural Networks
por: Ni, Hong, et al.
Publicado: (2020)

Nutil: A Pre- and Post-processing Toolbox for Histological Rodent Brain Section Images
por: Groeneboom, Nicolaas E., et al.
Publicado: (2020)

Waxholm Space atlas of the rat brain: a 3D atlas supporting data analysis and integration
por: Kleven, Heidi, et al.
Publicado: (2023)

A fully-automatic caudate nucleus segmentation of brain MRI: Application in volumetric analysis of pediatric attention-deficit/hyperactivity disorder
por: Igual, Laura, et al.
Publicado: (2011)

Stereotactic Localization: From Single-Slice to Multi-Slice Registration Including a Novel Solution for Parallel Bipanels
por: Sedrak, Mark, et al.
Publicado: (2022)

Bayesian Fully Convolutional Networks for Brain Image Registration
por: Cui, Kunpeng, et al.
Publicado: (2021)

A method for accurate spatial registration of PET images and histopathology slices
por: Puri, Tanuj, et al.
Publicado: (2015)

Automatic, global registration in laparoscopic liver surgery
por: Koo, Bongjin, et al.
Publicado: (2021)

Slice-to-Volume Nonrigid Registration of Histological Sections to MR Images of the Human Brain
por: Osechinskiy, Sergey, et al.
Publicado: (2011)

Visualization of anomalous origin and course of coronary arteries in 748 consecutive symptomatic patients by 64-slice computed tomography angiography
por: von Ziegler, Franz, et al.
Publicado: (2009)

Accuracy of automatic couch corrections with on‐line volumetric imaging
por: Li, Winnie, et al.
Publicado: (2009)

Fast volumetric registration method for tumor follow‐up in pulmonary CT exams
por: Silva, José Silvestre, et al.
Publicado: (2011)

Fully-Automated Volumetric MRI with Normative Ranges: Translation to Clinical Practice
por: Brewer, J. B.
Publicado: (2009)

Assessing the effect of CT slice interval on unidimensional, bidimensional and volumetric measurements of solid tumours
por: Tan, Yongqiang, et al.
Publicado: (2012)

Reattachable fiducial skin marker for automatic multimodality registration
por: Mittmann, Benjamin J., et al.
Publicado: (2022)

Detecting the effect of genetic diversity on brain composition in an Alzheimer’s disease mouse model
por: Gurdon, Brianna, et al.
Publicado: (2023)

A Timm-Nissl multiplane microscopic atlas of rat brain zincergic terminal fields and metal-containing glia
por: Blixhavn, Camilla H., et al.
Publicado: (2023)

Fully-automatic, patient-specific 3D aortic arch modeling for patient treatment with aortic arch anomalies
por: Leonardi, Benedetta, et al.
Publicado: (2012)

Volumetric registration framework for multimodal functional magnetic resonance and optoacoustic tomography of the rodent brain
por: Gezginer, Irmak, et al.
Publicado: (2023)

Automatic interactive optimization for volumetric modulated arc therapy planning
por: Tol, Jim P, et al.
Publicado: (2015)

A Semi-Automated Workflow for Brain Slice Histology Alignment, Registration, and Cell Quantification (SHARCQ)
por: Lauridsen, Kristoffer, et al.
Publicado: (2022)

Fully automated registration of vibrational microspectroscopic images in histologically stained tissue sections
por: Yang, Chen, et al.
Publicado: (2015)

Fully Affine Invariant Methods for Cross-Session Registration of Calcium Imaging Data
por: Li, Chunyue, et al.
Publicado: (2020)

Cannot write session to /tmp/vufind_sessions/sess_igjel19dgl2ge5pl42k7ukigcl