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Identification of delirium from real-world electronic health record clinical notes
INTRODUCTION: We tested the ability of our natural language processing (NLP) algorithm to identify delirium episodes in a large-scale study using real-world clinical notes. METHODS: We used the Rochester Epidemiology Project to identify persons ≥ 65 years who were hospitalized between 2011 and 2017....
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Cambridge University Press
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10514685/ https://www.ncbi.nlm.nih.gov/pubmed/37745932 http://dx.doi.org/10.1017/cts.2023.610 |
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author | St. Sauver, Jennifer Fu, Sunyang Sohn, Sunghwan Weston, Susan Fan, Chun Olson, Janet Thorsteinsdottir, Bjoerg LeBrasseur, Nathan Pagali, Sandeep Rocca, Walter Liu, Hongfang |
author_facet | St. Sauver, Jennifer Fu, Sunyang Sohn, Sunghwan Weston, Susan Fan, Chun Olson, Janet Thorsteinsdottir, Bjoerg LeBrasseur, Nathan Pagali, Sandeep Rocca, Walter Liu, Hongfang |
author_sort | St. Sauver, Jennifer |
collection | PubMed |
description | INTRODUCTION: We tested the ability of our natural language processing (NLP) algorithm to identify delirium episodes in a large-scale study using real-world clinical notes. METHODS: We used the Rochester Epidemiology Project to identify persons ≥ 65 years who were hospitalized between 2011 and 2017. We identified all persons with an International Classification of Diseases code for delirium within ±14 days of a hospitalization. We independently applied our NLP algorithm to all clinical notes for this same population. We calculated rates using number of delirium episodes as the numerator and number of hospitalizations as the denominator. Rates were estimated overall, by demographic characteristics, and by year of episode, and differences were tested using Poisson regression. RESULTS: In total, 14,255 persons had 37,554 hospitalizations between 2011 and 2017. The code-based delirium rate was 3.02 per 100 hospitalizations (95% CI: 2.85, 3.20). The NLP-based rate was 7.36 per 100 (95% CI: 7.09, 7.64). Rates increased with age (both p < 0.0001). Code-based rates were higher in men compared to women (p = 0.03), but NLP-based rates were similar by sex (p = 0.89). Code-based rates were similar by race and ethnicity, but NLP-based rates were higher in the White population compared to the Black and Asian populations (p = 0.001). Both types of rates increased significantly over time (both p values < 0.001). CONCLUSIONS: The NLP algorithm identified more delirium episodes compared to the ICD code method. However, NLP may still underestimate delirium cases because of limitations in real-world clinical notes, including incomplete documentation, practice changes over time, and missing clinical notes in some time periods. |
format | Online Article Text |
id | pubmed-10514685 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Cambridge University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-105146852023-09-23 Identification of delirium from real-world electronic health record clinical notes St. Sauver, Jennifer Fu, Sunyang Sohn, Sunghwan Weston, Susan Fan, Chun Olson, Janet Thorsteinsdottir, Bjoerg LeBrasseur, Nathan Pagali, Sandeep Rocca, Walter Liu, Hongfang J Clin Transl Sci Research Article INTRODUCTION: We tested the ability of our natural language processing (NLP) algorithm to identify delirium episodes in a large-scale study using real-world clinical notes. METHODS: We used the Rochester Epidemiology Project to identify persons ≥ 65 years who were hospitalized between 2011 and 2017. We identified all persons with an International Classification of Diseases code for delirium within ±14 days of a hospitalization. We independently applied our NLP algorithm to all clinical notes for this same population. We calculated rates using number of delirium episodes as the numerator and number of hospitalizations as the denominator. Rates were estimated overall, by demographic characteristics, and by year of episode, and differences were tested using Poisson regression. RESULTS: In total, 14,255 persons had 37,554 hospitalizations between 2011 and 2017. The code-based delirium rate was 3.02 per 100 hospitalizations (95% CI: 2.85, 3.20). The NLP-based rate was 7.36 per 100 (95% CI: 7.09, 7.64). Rates increased with age (both p < 0.0001). Code-based rates were higher in men compared to women (p = 0.03), but NLP-based rates were similar by sex (p = 0.89). Code-based rates were similar by race and ethnicity, but NLP-based rates were higher in the White population compared to the Black and Asian populations (p = 0.001). Both types of rates increased significantly over time (both p values < 0.001). CONCLUSIONS: The NLP algorithm identified more delirium episodes compared to the ICD code method. However, NLP may still underestimate delirium cases because of limitations in real-world clinical notes, including incomplete documentation, practice changes over time, and missing clinical notes in some time periods. Cambridge University Press 2023-08-24 /pmc/articles/PMC10514685/ /pubmed/37745932 http://dx.doi.org/10.1017/cts.2023.610 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by-nc-nd/4.0/This is an Open Access article, distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivatives licence (http://creativecommons.org/licenses/by-nc-nd/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided that no alterations are made and the original article is properly cited. The written permission of Cambridge University Press must be obtained prior to any commercial use and/or adaptation of the article. |
spellingShingle | Research Article St. Sauver, Jennifer Fu, Sunyang Sohn, Sunghwan Weston, Susan Fan, Chun Olson, Janet Thorsteinsdottir, Bjoerg LeBrasseur, Nathan Pagali, Sandeep Rocca, Walter Liu, Hongfang Identification of delirium from real-world electronic health record clinical notes |
title | Identification of delirium from real-world electronic health record clinical notes |
title_full | Identification of delirium from real-world electronic health record clinical notes |
title_fullStr | Identification of delirium from real-world electronic health record clinical notes |
title_full_unstemmed | Identification of delirium from real-world electronic health record clinical notes |
title_short | Identification of delirium from real-world electronic health record clinical notes |
title_sort | identification of delirium from real-world electronic health record clinical notes |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10514685/ https://www.ncbi.nlm.nih.gov/pubmed/37745932 http://dx.doi.org/10.1017/cts.2023.610 |
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