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Ten years and a million links: building a global taxonomic library connecting persistent identifiers for names, publications and people
A major gap in the biodiversity knowledge graph is a connection between taxonomic names and the taxonomic literature. While both names and publications often have persistent identifiers (PIDs), such as Life Science Identifiers (LSIDs) or Digital Object Identifiers (DOIs), LSIDs for names are rarely...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Pensoft Publishers
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10514697/ https://www.ncbi.nlm.nih.gov/pubmed/37745899 http://dx.doi.org/10.3897/BDJ.11.e107914 |
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author | Page, Roderic |
author_facet | Page, Roderic |
author_sort | Page, Roderic |
collection | PubMed |
description | A major gap in the biodiversity knowledge graph is a connection between taxonomic names and the taxonomic literature. While both names and publications often have persistent identifiers (PIDs), such as Life Science Identifiers (LSIDs) or Digital Object Identifiers (DOIs), LSIDs for names are rarely linked to DOIs for publications. This article describes efforts to make those connections across three large taxonomic databases: Index Fungorum, International Plant Names Index (IPNI) and the Index of Organism Names (ION). Over a million names have been matched to DOIs or other persistent identifiers for taxonomic publications. This represents approximately 36% of names for which publication data are available. The mappings between LSIDs and publication PIDs are made available through ChecklistBank. Applications of this mapping are discussed, including a web app to locate the citation of a taxonomic name and a knowledge graph that uses data on researcher ORCID ids to connect taxonomic names and publications to authors of those names. |
format | Online Article Text |
id | pubmed-10514697 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Pensoft Publishers |
record_format | MEDLINE/PubMed |
spelling | pubmed-105146972023-09-23 Ten years and a million links: building a global taxonomic library connecting persistent identifiers for names, publications and people Page, Roderic Biodivers Data J Research Article A major gap in the biodiversity knowledge graph is a connection between taxonomic names and the taxonomic literature. While both names and publications often have persistent identifiers (PIDs), such as Life Science Identifiers (LSIDs) or Digital Object Identifiers (DOIs), LSIDs for names are rarely linked to DOIs for publications. This article describes efforts to make those connections across three large taxonomic databases: Index Fungorum, International Plant Names Index (IPNI) and the Index of Organism Names (ION). Over a million names have been matched to DOIs or other persistent identifiers for taxonomic publications. This represents approximately 36% of names for which publication data are available. The mappings between LSIDs and publication PIDs are made available through ChecklistBank. Applications of this mapping are discussed, including a web app to locate the citation of a taxonomic name and a knowledge graph that uses data on researcher ORCID ids to connect taxonomic names and publications to authors of those names. Pensoft Publishers 2023-09-14 /pmc/articles/PMC10514697/ /pubmed/37745899 http://dx.doi.org/10.3897/BDJ.11.e107914 Text en Roderic Page https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Page, Roderic Ten years and a million links: building a global taxonomic library connecting persistent identifiers for names, publications and people |
title | Ten years and a million links: building a global taxonomic library connecting persistent identifiers for names, publications and people |
title_full | Ten years and a million links: building a global taxonomic library connecting persistent identifiers for names, publications and people |
title_fullStr | Ten years and a million links: building a global taxonomic library connecting persistent identifiers for names, publications and people |
title_full_unstemmed | Ten years and a million links: building a global taxonomic library connecting persistent identifiers for names, publications and people |
title_short | Ten years and a million links: building a global taxonomic library connecting persistent identifiers for names, publications and people |
title_sort | ten years and a million links: building a global taxonomic library connecting persistent identifiers for names, publications and people |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10514697/ https://www.ncbi.nlm.nih.gov/pubmed/37745899 http://dx.doi.org/10.3897/BDJ.11.e107914 |
work_keys_str_mv | AT pageroderic tenyearsandamillionlinksbuildingaglobaltaxonomiclibraryconnectingpersistentidentifiersfornamespublicationsandpeople |