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Identification of potential hub genes linked to immune and metabolic alterations in postoperative systemic inflammatory dysregulation

BACKGROUND: Postoperative systemic inflammatory dysregulation (PSID) is characterised by strongly interlinked immune and metabolic abnormalities. However, the hub genes responsible for the interconnections between these two systemic alterations remain to be identified. METHODS: We analysed different...

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Autores principales: Cao, Silu, Tang, Jinxuan, Fei, Miaomiao, Jing, Qi, Meng, Fanbing, Zhang, Meixian, Liu, Qidong, Zhang, Hui, Li, Cheng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10515200/
https://www.ncbi.nlm.nih.gov/pubmed/37744382
http://dx.doi.org/10.3389/fimmu.2023.1238774
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author Cao, Silu
Tang, Jinxuan
Fei, Miaomiao
Jing, Qi
Meng, Fanbing
Zhang, Meixian
Liu, Qidong
Zhang, Hui
Li, Cheng
author_facet Cao, Silu
Tang, Jinxuan
Fei, Miaomiao
Jing, Qi
Meng, Fanbing
Zhang, Meixian
Liu, Qidong
Zhang, Hui
Li, Cheng
author_sort Cao, Silu
collection PubMed
description BACKGROUND: Postoperative systemic inflammatory dysregulation (PSID) is characterised by strongly interlinked immune and metabolic abnormalities. However, the hub genes responsible for the interconnections between these two systemic alterations remain to be identified. METHODS: We analysed differentially expressed genes (DEGs) of individual peripheral blood nucleated cells in patients with PSID (n = 21, CRP > 250 mg/L) and control patients (n = 25, CRP < 75 mg/L) following major abdominal surgery, along with their biological functions. Correlation analyses were conducted to explore the interconnections of immune-related DEGs (irDEGs) and metabolism-related DEGs (mrDEGs). Two methods were used to screen hub genes for irDEGs and mrDEGs: we screened for hub genes among DEGs via 12 algorithms using CytoHubba in Cytoscape, and also screened for hub immune-related and metabolic-related genes using weighted gene co-expression network analysis. The hub genes selected were involved in the interaction between changes in immunity and metabolism in PSID. Finally, we validated our results in mice with PSID to confirm the findings. RESULTS: We identified 512 upregulated and 254 downregulated DEGs in patients with PSID compared with controls. Gene enrichment analysis revealed that DEGs were significantly associated with immune- and metabolism-related biological processes and pathways. Correlation analyses revealed a close association between irDEGs and mrDEGs. Fourteen unique hub genes were identified via 12 screening algorithms using CytoHubba in Cytoscape and via weighted gene co-expression network analysis. Among these, CD28, CD40LG, MAPK14, and S100A12 were identified as hub genes among both immune- and metabolism-related genes; these genes play a critical role in the interaction between alterations in immunity and metabolism in PSID. The experimental results also showed that the expression of these genes was significantly altered in PSID mice. CONCLUSION: This study identified hub genes associated with immune and metabolic alterations in patients with PSID and hub genes that link these alterations. These findings provide novel insights into the mechanisms underlying immune and metabolic interactions and new targets for clinical treatment can be proposed on this basis.
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spelling pubmed-105152002023-09-23 Identification of potential hub genes linked to immune and metabolic alterations in postoperative systemic inflammatory dysregulation Cao, Silu Tang, Jinxuan Fei, Miaomiao Jing, Qi Meng, Fanbing Zhang, Meixian Liu, Qidong Zhang, Hui Li, Cheng Front Immunol Immunology BACKGROUND: Postoperative systemic inflammatory dysregulation (PSID) is characterised by strongly interlinked immune and metabolic abnormalities. However, the hub genes responsible for the interconnections between these two systemic alterations remain to be identified. METHODS: We analysed differentially expressed genes (DEGs) of individual peripheral blood nucleated cells in patients with PSID (n = 21, CRP > 250 mg/L) and control patients (n = 25, CRP < 75 mg/L) following major abdominal surgery, along with their biological functions. Correlation analyses were conducted to explore the interconnections of immune-related DEGs (irDEGs) and metabolism-related DEGs (mrDEGs). Two methods were used to screen hub genes for irDEGs and mrDEGs: we screened for hub genes among DEGs via 12 algorithms using CytoHubba in Cytoscape, and also screened for hub immune-related and metabolic-related genes using weighted gene co-expression network analysis. The hub genes selected were involved in the interaction between changes in immunity and metabolism in PSID. Finally, we validated our results in mice with PSID to confirm the findings. RESULTS: We identified 512 upregulated and 254 downregulated DEGs in patients with PSID compared with controls. Gene enrichment analysis revealed that DEGs were significantly associated with immune- and metabolism-related biological processes and pathways. Correlation analyses revealed a close association between irDEGs and mrDEGs. Fourteen unique hub genes were identified via 12 screening algorithms using CytoHubba in Cytoscape and via weighted gene co-expression network analysis. Among these, CD28, CD40LG, MAPK14, and S100A12 were identified as hub genes among both immune- and metabolism-related genes; these genes play a critical role in the interaction between alterations in immunity and metabolism in PSID. The experimental results also showed that the expression of these genes was significantly altered in PSID mice. CONCLUSION: This study identified hub genes associated with immune and metabolic alterations in patients with PSID and hub genes that link these alterations. These findings provide novel insights into the mechanisms underlying immune and metabolic interactions and new targets for clinical treatment can be proposed on this basis. Frontiers Media S.A. 2023-09-08 /pmc/articles/PMC10515200/ /pubmed/37744382 http://dx.doi.org/10.3389/fimmu.2023.1238774 Text en Copyright © 2023 Cao, Tang, Fei, Jing, Meng, Zhang, Liu, Zhang and Li https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Immunology
Cao, Silu
Tang, Jinxuan
Fei, Miaomiao
Jing, Qi
Meng, Fanbing
Zhang, Meixian
Liu, Qidong
Zhang, Hui
Li, Cheng
Identification of potential hub genes linked to immune and metabolic alterations in postoperative systemic inflammatory dysregulation
title Identification of potential hub genes linked to immune and metabolic alterations in postoperative systemic inflammatory dysregulation
title_full Identification of potential hub genes linked to immune and metabolic alterations in postoperative systemic inflammatory dysregulation
title_fullStr Identification of potential hub genes linked to immune and metabolic alterations in postoperative systemic inflammatory dysregulation
title_full_unstemmed Identification of potential hub genes linked to immune and metabolic alterations in postoperative systemic inflammatory dysregulation
title_short Identification of potential hub genes linked to immune and metabolic alterations in postoperative systemic inflammatory dysregulation
title_sort identification of potential hub genes linked to immune and metabolic alterations in postoperative systemic inflammatory dysregulation
topic Immunology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10515200/
https://www.ncbi.nlm.nih.gov/pubmed/37744382
http://dx.doi.org/10.3389/fimmu.2023.1238774
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