Cargando…

Topological Entanglement of Linear Catenanes: Knots and Threadings

[Image: see text] We used molecular dynamics simulations to investigate the self-entanglements of the collapsed linear catenanes. We found two different types of topologically complex states. First, we observed numerous long-lived knotting events of the catenane backbone. However, comparison with co...

Descripción completa

Detalles Bibliográficos
Autores principales: Dehaghani, Zahra Ahmadian, Chiarantoni, Pietro, Micheletti, Cristian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2023
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10515615/
https://www.ncbi.nlm.nih.gov/pubmed/37638542
http://dx.doi.org/10.1021/acsmacrolett.3c00315
_version_ 1785108985294094336
author Dehaghani, Zahra Ahmadian
Chiarantoni, Pietro
Micheletti, Cristian
author_facet Dehaghani, Zahra Ahmadian
Chiarantoni, Pietro
Micheletti, Cristian
author_sort Dehaghani, Zahra Ahmadian
collection PubMed
description [Image: see text] We used molecular dynamics simulations to investigate the self-entanglements of the collapsed linear catenanes. We found two different types of topologically complex states. First, we observed numerous long-lived knotting events of the catenane backbone. However, comparison with conventional polymers reveals that knots are suppressed in catenanes. Next, we observed topologically complex states with no analogue in polymers, where a concatenated ring was threaded by other near or distal rings sliding through it. Differently from knots, these threaded states can disentangle by becoming fully tightened. A detailed thermodynamic and microscopic analysis is employed to rationalize the persistence of threaded states, which can survive significant internal reorganizations of the entire catenane. We finally discuss the broader implications of these previously unreported types of entanglements for other systems, such as noncollapsed and interacting catenanes.
format Online
Article
Text
id pubmed-10515615
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher American Chemical Society
record_format MEDLINE/PubMed
spelling pubmed-105156152023-09-23 Topological Entanglement of Linear Catenanes: Knots and Threadings Dehaghani, Zahra Ahmadian Chiarantoni, Pietro Micheletti, Cristian ACS Macro Lett [Image: see text] We used molecular dynamics simulations to investigate the self-entanglements of the collapsed linear catenanes. We found two different types of topologically complex states. First, we observed numerous long-lived knotting events of the catenane backbone. However, comparison with conventional polymers reveals that knots are suppressed in catenanes. Next, we observed topologically complex states with no analogue in polymers, where a concatenated ring was threaded by other near or distal rings sliding through it. Differently from knots, these threaded states can disentangle by becoming fully tightened. A detailed thermodynamic and microscopic analysis is employed to rationalize the persistence of threaded states, which can survive significant internal reorganizations of the entire catenane. We finally discuss the broader implications of these previously unreported types of entanglements for other systems, such as noncollapsed and interacting catenanes. American Chemical Society 2023-08-28 /pmc/articles/PMC10515615/ /pubmed/37638542 http://dx.doi.org/10.1021/acsmacrolett.3c00315 Text en © 2023 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Dehaghani, Zahra Ahmadian
Chiarantoni, Pietro
Micheletti, Cristian
Topological Entanglement of Linear Catenanes: Knots and Threadings
title Topological Entanglement of Linear Catenanes: Knots and Threadings
title_full Topological Entanglement of Linear Catenanes: Knots and Threadings
title_fullStr Topological Entanglement of Linear Catenanes: Knots and Threadings
title_full_unstemmed Topological Entanglement of Linear Catenanes: Knots and Threadings
title_short Topological Entanglement of Linear Catenanes: Knots and Threadings
title_sort topological entanglement of linear catenanes: knots and threadings
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10515615/
https://www.ncbi.nlm.nih.gov/pubmed/37638542
http://dx.doi.org/10.1021/acsmacrolett.3c00315
work_keys_str_mv AT dehaghanizahraahmadian topologicalentanglementoflinearcatenanesknotsandthreadings
AT chiarantonipietro topologicalentanglementoflinearcatenanesknotsandthreadings
AT micheletticristian topologicalentanglementoflinearcatenanesknotsandthreadings