Cargando…
DME-DeepLabV3+: a lightweight model for diabetic macular edema extraction based on DeepLabV3+ architecture
INTRODUCTION: Diabetic macular edema (DME) is a major cause of vision impairment in the patients with diabetes. Optical Coherence Tomography (OCT) is an important ophthalmic imaging method, which can enable early detection of DME. However, it is difficult to achieve high-efficiency and high-precisio...
Autores principales: | , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10515718/ https://www.ncbi.nlm.nih.gov/pubmed/37746086 http://dx.doi.org/10.3389/fmed.2023.1150295 |
_version_ | 1785109008131031040 |
---|---|
author | Bai, Yun Li, Jing Shi, Lianjun Jiang, Qin Yan, Biao Wang, Zhenhua |
author_facet | Bai, Yun Li, Jing Shi, Lianjun Jiang, Qin Yan, Biao Wang, Zhenhua |
author_sort | Bai, Yun |
collection | PubMed |
description | INTRODUCTION: Diabetic macular edema (DME) is a major cause of vision impairment in the patients with diabetes. Optical Coherence Tomography (OCT) is an important ophthalmic imaging method, which can enable early detection of DME. However, it is difficult to achieve high-efficiency and high-precision extraction of DME in OCT images because the sources of OCT images are diverse and the quality of OCT images is not stable. Thus, it is still required to design a model to improve the accuracy of DME extraction in OCT images. METHODS: A lightweight model (DME-DeepLabV3+) was proposed for DME extraction using a DeepLabV3+ architecture. In this model, MobileNetV2 model was used as the backbone for extracting low-level features of DME. The improved ASPP with sawtooth wave-like dilation rate was used for extracting high-level features of DME. Then, the decoder was used to fuse and refine low-level and high-level features of DME. Finally, 1711 OCT images were collected from the Kermany dataset and the Affiliated Eye Hospital. 1369, 171, and 171 OCT images were randomly selected for training, validation, and testing, respectively. CONCLUSION: In ablation experiment, the proposed DME-DeepLabV3+ model was compared against DeepLabV3+ model with different setting to evaluate the effects of MobileNetV2 and improved ASPP on DME extraction. DME-DeepLabV3+ had better extraction performance, especially in small-scale macular edema regions. The extraction results of DME-DeepLabV3+ were close to ground truth. In comparative experiment, the proposed DME-DeepLabV3+ model was compared against other models, including FCN, UNet, PSPNet, ICNet, and DANet, to evaluate DME extraction performance. DME-DeepLabV3+ model had better DME extraction performance than other models as shown by greater pixel accuracy (PA), mean pixel accuracy (MPA), precision (Pre), recall (Re), F1-score (F1), and mean Intersection over Union (MIoU), which were 98.71%, 95.23%, 91.19%, 91.12%, 91.15%, and 91.18%, respectively. DISCUSSION: DME-DeepLabV3+ model is suitable for DME extraction in OCT images and can assist the ophthalmologists in the management of ocular diseases. |
format | Online Article Text |
id | pubmed-10515718 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-105157182023-09-23 DME-DeepLabV3+: a lightweight model for diabetic macular edema extraction based on DeepLabV3+ architecture Bai, Yun Li, Jing Shi, Lianjun Jiang, Qin Yan, Biao Wang, Zhenhua Front Med (Lausanne) Medicine INTRODUCTION: Diabetic macular edema (DME) is a major cause of vision impairment in the patients with diabetes. Optical Coherence Tomography (OCT) is an important ophthalmic imaging method, which can enable early detection of DME. However, it is difficult to achieve high-efficiency and high-precision extraction of DME in OCT images because the sources of OCT images are diverse and the quality of OCT images is not stable. Thus, it is still required to design a model to improve the accuracy of DME extraction in OCT images. METHODS: A lightweight model (DME-DeepLabV3+) was proposed for DME extraction using a DeepLabV3+ architecture. In this model, MobileNetV2 model was used as the backbone for extracting low-level features of DME. The improved ASPP with sawtooth wave-like dilation rate was used for extracting high-level features of DME. Then, the decoder was used to fuse and refine low-level and high-level features of DME. Finally, 1711 OCT images were collected from the Kermany dataset and the Affiliated Eye Hospital. 1369, 171, and 171 OCT images were randomly selected for training, validation, and testing, respectively. CONCLUSION: In ablation experiment, the proposed DME-DeepLabV3+ model was compared against DeepLabV3+ model with different setting to evaluate the effects of MobileNetV2 and improved ASPP on DME extraction. DME-DeepLabV3+ had better extraction performance, especially in small-scale macular edema regions. The extraction results of DME-DeepLabV3+ were close to ground truth. In comparative experiment, the proposed DME-DeepLabV3+ model was compared against other models, including FCN, UNet, PSPNet, ICNet, and DANet, to evaluate DME extraction performance. DME-DeepLabV3+ model had better DME extraction performance than other models as shown by greater pixel accuracy (PA), mean pixel accuracy (MPA), precision (Pre), recall (Re), F1-score (F1), and mean Intersection over Union (MIoU), which were 98.71%, 95.23%, 91.19%, 91.12%, 91.15%, and 91.18%, respectively. DISCUSSION: DME-DeepLabV3+ model is suitable for DME extraction in OCT images and can assist the ophthalmologists in the management of ocular diseases. Frontiers Media S.A. 2023-09-08 /pmc/articles/PMC10515718/ /pubmed/37746086 http://dx.doi.org/10.3389/fmed.2023.1150295 Text en Copyright © 2023 Bai, Li, Shi, Jiang, Yan and Wang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Medicine Bai, Yun Li, Jing Shi, Lianjun Jiang, Qin Yan, Biao Wang, Zhenhua DME-DeepLabV3+: a lightweight model for diabetic macular edema extraction based on DeepLabV3+ architecture |
title | DME-DeepLabV3+: a lightweight model for diabetic macular edema extraction based on DeepLabV3+ architecture |
title_full | DME-DeepLabV3+: a lightweight model for diabetic macular edema extraction based on DeepLabV3+ architecture |
title_fullStr | DME-DeepLabV3+: a lightweight model for diabetic macular edema extraction based on DeepLabV3+ architecture |
title_full_unstemmed | DME-DeepLabV3+: a lightweight model for diabetic macular edema extraction based on DeepLabV3+ architecture |
title_short | DME-DeepLabV3+: a lightweight model for diabetic macular edema extraction based on DeepLabV3+ architecture |
title_sort | dme-deeplabv3+: a lightweight model for diabetic macular edema extraction based on deeplabv3+ architecture |
topic | Medicine |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10515718/ https://www.ncbi.nlm.nih.gov/pubmed/37746086 http://dx.doi.org/10.3389/fmed.2023.1150295 |
work_keys_str_mv | AT baiyun dmedeeplabv3alightweightmodelfordiabeticmacularedemaextractionbasedondeeplabv3architecture AT lijing dmedeeplabv3alightweightmodelfordiabeticmacularedemaextractionbasedondeeplabv3architecture AT shilianjun dmedeeplabv3alightweightmodelfordiabeticmacularedemaextractionbasedondeeplabv3architecture AT jiangqin dmedeeplabv3alightweightmodelfordiabeticmacularedemaextractionbasedondeeplabv3architecture AT yanbiao dmedeeplabv3alightweightmodelfordiabeticmacularedemaextractionbasedondeeplabv3architecture AT wangzhenhua dmedeeplabv3alightweightmodelfordiabeticmacularedemaextractionbasedondeeplabv3architecture |