Cargando…

DME-DeepLabV3+: a lightweight model for diabetic macular edema extraction based on DeepLabV3+ architecture

INTRODUCTION: Diabetic macular edema (DME) is a major cause of vision impairment in the patients with diabetes. Optical Coherence Tomography (OCT) is an important ophthalmic imaging method, which can enable early detection of DME. However, it is difficult to achieve high-efficiency and high-precisio...

Descripción completa

Detalles Bibliográficos
Autores principales: Bai, Yun, Li, Jing, Shi, Lianjun, Jiang, Qin, Yan, Biao, Wang, Zhenhua
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10515718/
https://www.ncbi.nlm.nih.gov/pubmed/37746086
http://dx.doi.org/10.3389/fmed.2023.1150295
_version_ 1785109008131031040
author Bai, Yun
Li, Jing
Shi, Lianjun
Jiang, Qin
Yan, Biao
Wang, Zhenhua
author_facet Bai, Yun
Li, Jing
Shi, Lianjun
Jiang, Qin
Yan, Biao
Wang, Zhenhua
author_sort Bai, Yun
collection PubMed
description INTRODUCTION: Diabetic macular edema (DME) is a major cause of vision impairment in the patients with diabetes. Optical Coherence Tomography (OCT) is an important ophthalmic imaging method, which can enable early detection of DME. However, it is difficult to achieve high-efficiency and high-precision extraction of DME in OCT images because the sources of OCT images are diverse and the quality of OCT images is not stable. Thus, it is still required to design a model to improve the accuracy of DME extraction in OCT images. METHODS: A lightweight model (DME-DeepLabV3+) was proposed for DME extraction using a DeepLabV3+ architecture. In this model, MobileNetV2 model was used as the backbone for extracting low-level features of DME. The improved ASPP with sawtooth wave-like dilation rate was used for extracting high-level features of DME. Then, the decoder was used to fuse and refine low-level and high-level features of DME. Finally, 1711 OCT images were collected from the Kermany dataset and the Affiliated Eye Hospital. 1369, 171, and 171 OCT images were randomly selected for training, validation, and testing, respectively. CONCLUSION: In ablation experiment, the proposed DME-DeepLabV3+ model was compared against DeepLabV3+ model with different setting to evaluate the effects of MobileNetV2 and improved ASPP on DME extraction. DME-DeepLabV3+ had better extraction performance, especially in small-scale macular edema regions. The extraction results of DME-DeepLabV3+ were close to ground truth. In comparative experiment, the proposed DME-DeepLabV3+ model was compared against other models, including FCN, UNet, PSPNet, ICNet, and DANet, to evaluate DME extraction performance. DME-DeepLabV3+ model had better DME extraction performance than other models as shown by greater pixel accuracy (PA), mean pixel accuracy (MPA), precision (Pre), recall (Re), F1-score (F1), and mean Intersection over Union (MIoU), which were 98.71%, 95.23%, 91.19%, 91.12%, 91.15%, and 91.18%, respectively. DISCUSSION: DME-DeepLabV3+ model is suitable for DME extraction in OCT images and can assist the ophthalmologists in the management of ocular diseases.
format Online
Article
Text
id pubmed-10515718
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-105157182023-09-23 DME-DeepLabV3+: a lightweight model for diabetic macular edema extraction based on DeepLabV3+ architecture Bai, Yun Li, Jing Shi, Lianjun Jiang, Qin Yan, Biao Wang, Zhenhua Front Med (Lausanne) Medicine INTRODUCTION: Diabetic macular edema (DME) is a major cause of vision impairment in the patients with diabetes. Optical Coherence Tomography (OCT) is an important ophthalmic imaging method, which can enable early detection of DME. However, it is difficult to achieve high-efficiency and high-precision extraction of DME in OCT images because the sources of OCT images are diverse and the quality of OCT images is not stable. Thus, it is still required to design a model to improve the accuracy of DME extraction in OCT images. METHODS: A lightweight model (DME-DeepLabV3+) was proposed for DME extraction using a DeepLabV3+ architecture. In this model, MobileNetV2 model was used as the backbone for extracting low-level features of DME. The improved ASPP with sawtooth wave-like dilation rate was used for extracting high-level features of DME. Then, the decoder was used to fuse and refine low-level and high-level features of DME. Finally, 1711 OCT images were collected from the Kermany dataset and the Affiliated Eye Hospital. 1369, 171, and 171 OCT images were randomly selected for training, validation, and testing, respectively. CONCLUSION: In ablation experiment, the proposed DME-DeepLabV3+ model was compared against DeepLabV3+ model with different setting to evaluate the effects of MobileNetV2 and improved ASPP on DME extraction. DME-DeepLabV3+ had better extraction performance, especially in small-scale macular edema regions. The extraction results of DME-DeepLabV3+ were close to ground truth. In comparative experiment, the proposed DME-DeepLabV3+ model was compared against other models, including FCN, UNet, PSPNet, ICNet, and DANet, to evaluate DME extraction performance. DME-DeepLabV3+ model had better DME extraction performance than other models as shown by greater pixel accuracy (PA), mean pixel accuracy (MPA), precision (Pre), recall (Re), F1-score (F1), and mean Intersection over Union (MIoU), which were 98.71%, 95.23%, 91.19%, 91.12%, 91.15%, and 91.18%, respectively. DISCUSSION: DME-DeepLabV3+ model is suitable for DME extraction in OCT images and can assist the ophthalmologists in the management of ocular diseases. Frontiers Media S.A. 2023-09-08 /pmc/articles/PMC10515718/ /pubmed/37746086 http://dx.doi.org/10.3389/fmed.2023.1150295 Text en Copyright © 2023 Bai, Li, Shi, Jiang, Yan and Wang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Medicine
Bai, Yun
Li, Jing
Shi, Lianjun
Jiang, Qin
Yan, Biao
Wang, Zhenhua
DME-DeepLabV3+: a lightweight model for diabetic macular edema extraction based on DeepLabV3+ architecture
title DME-DeepLabV3+: a lightweight model for diabetic macular edema extraction based on DeepLabV3+ architecture
title_full DME-DeepLabV3+: a lightweight model for diabetic macular edema extraction based on DeepLabV3+ architecture
title_fullStr DME-DeepLabV3+: a lightweight model for diabetic macular edema extraction based on DeepLabV3+ architecture
title_full_unstemmed DME-DeepLabV3+: a lightweight model for diabetic macular edema extraction based on DeepLabV3+ architecture
title_short DME-DeepLabV3+: a lightweight model for diabetic macular edema extraction based on DeepLabV3+ architecture
title_sort dme-deeplabv3+: a lightweight model for diabetic macular edema extraction based on deeplabv3+ architecture
topic Medicine
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10515718/
https://www.ncbi.nlm.nih.gov/pubmed/37746086
http://dx.doi.org/10.3389/fmed.2023.1150295
work_keys_str_mv AT baiyun dmedeeplabv3alightweightmodelfordiabeticmacularedemaextractionbasedondeeplabv3architecture
AT lijing dmedeeplabv3alightweightmodelfordiabeticmacularedemaextractionbasedondeeplabv3architecture
AT shilianjun dmedeeplabv3alightweightmodelfordiabeticmacularedemaextractionbasedondeeplabv3architecture
AT jiangqin dmedeeplabv3alightweightmodelfordiabeticmacularedemaextractionbasedondeeplabv3architecture
AT yanbiao dmedeeplabv3alightweightmodelfordiabeticmacularedemaextractionbasedondeeplabv3architecture
AT wangzhenhua dmedeeplabv3alightweightmodelfordiabeticmacularedemaextractionbasedondeeplabv3architecture