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Simplicity: web-based visualization and analysis of high-throughput cancer cell line screens

High-throughput drug screens are a powerful tool for cancer drug development. However, the results of such screens are often made available only as raw data, which is intractable for researchers without informatic skills, or as highly processed summary statistics, which can lack essential informatio...

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Autores principales: Ling, Alexander L., Zhang, Weijie, Lee, Adam, Xia, Yunong, Su, Mei-Chi, Gruener, Robert F., Jena, Sampreeti, Huang, Yingbo, Pareek, Siddhika, Shan, Yuting, Huang, R. Stephanie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cold Spring Harbor Laboratory 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10515753/
https://www.ncbi.nlm.nih.gov/pubmed/37745579
http://dx.doi.org/10.1101/2023.09.08.556619
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author Ling, Alexander L.
Zhang, Weijie
Lee, Adam
Xia, Yunong
Su, Mei-Chi
Gruener, Robert F.
Jena, Sampreeti
Huang, Yingbo
Pareek, Siddhika
Shan, Yuting
Huang, R. Stephanie
author_facet Ling, Alexander L.
Zhang, Weijie
Lee, Adam
Xia, Yunong
Su, Mei-Chi
Gruener, Robert F.
Jena, Sampreeti
Huang, Yingbo
Pareek, Siddhika
Shan, Yuting
Huang, R. Stephanie
author_sort Ling, Alexander L.
collection PubMed
description High-throughput drug screens are a powerful tool for cancer drug development. However, the results of such screens are often made available only as raw data, which is intractable for researchers without informatic skills, or as highly processed summary statistics, which can lack essential information for translating screening results into clinically meaningful discoveries. To improve the usability of these datasets, we developed Simplicity, a robust and user-friendly web interface for visualizing, exploring, and summarizing raw and processed data from high-throughput drug screens. Importantly, Simplicity allows for easy recalculation of summary statistics at user-defined drug concentrations. This allows Simplicity’s outputs to be used with methods that rely on statistics being calculated at clinically relevant doses. Simplicity can be freely accessed at https://oncotherapyinformatics.org/simplicity/.
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spelling pubmed-105157532023-09-23 Simplicity: web-based visualization and analysis of high-throughput cancer cell line screens Ling, Alexander L. Zhang, Weijie Lee, Adam Xia, Yunong Su, Mei-Chi Gruener, Robert F. Jena, Sampreeti Huang, Yingbo Pareek, Siddhika Shan, Yuting Huang, R. Stephanie bioRxiv Article High-throughput drug screens are a powerful tool for cancer drug development. However, the results of such screens are often made available only as raw data, which is intractable for researchers without informatic skills, or as highly processed summary statistics, which can lack essential information for translating screening results into clinically meaningful discoveries. To improve the usability of these datasets, we developed Simplicity, a robust and user-friendly web interface for visualizing, exploring, and summarizing raw and processed data from high-throughput drug screens. Importantly, Simplicity allows for easy recalculation of summary statistics at user-defined drug concentrations. This allows Simplicity’s outputs to be used with methods that rely on statistics being calculated at clinically relevant doses. Simplicity can be freely accessed at https://oncotherapyinformatics.org/simplicity/. Cold Spring Harbor Laboratory 2023-09-12 /pmc/articles/PMC10515753/ /pubmed/37745579 http://dx.doi.org/10.1101/2023.09.08.556619 Text en https://creativecommons.org/licenses/by-nc-nd/4.0/This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License (https://creativecommons.org/licenses/by-nc-nd/4.0/) , which allows reusers to copy and distribute the material in any medium or format in unadapted form only, for noncommercial purposes only, and only so long as attribution is given to the creator.
spellingShingle Article
Ling, Alexander L.
Zhang, Weijie
Lee, Adam
Xia, Yunong
Su, Mei-Chi
Gruener, Robert F.
Jena, Sampreeti
Huang, Yingbo
Pareek, Siddhika
Shan, Yuting
Huang, R. Stephanie
Simplicity: web-based visualization and analysis of high-throughput cancer cell line screens
title Simplicity: web-based visualization and analysis of high-throughput cancer cell line screens
title_full Simplicity: web-based visualization and analysis of high-throughput cancer cell line screens
title_fullStr Simplicity: web-based visualization and analysis of high-throughput cancer cell line screens
title_full_unstemmed Simplicity: web-based visualization and analysis of high-throughput cancer cell line screens
title_short Simplicity: web-based visualization and analysis of high-throughput cancer cell line screens
title_sort simplicity: web-based visualization and analysis of high-throughput cancer cell line screens
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10515753/
https://www.ncbi.nlm.nih.gov/pubmed/37745579
http://dx.doi.org/10.1101/2023.09.08.556619
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