Cargando…
Local read haplotagging enables accurate long-read small variant calling
Long-read sequencing technology has enabled variant detection in difficult-to-map regions of the genome and enabled rapid genetic diagnosis in clinical settings. Rapidly evolving third-generation sequencing platforms like Pacific Biosciences (PacBio) and Oxford nanopore technologies (ONT) are introd...
Autores principales: | Kolesnikov, Alexey, Cook, Daniel, Nattestad, Maria, McNulty, Brandy, Gorzynski, John, Goenka, Sneha, Ashley, Euan A., Jain, Miten, Miga, Karen H., Paten, Benedict, Chang, Pi-Chuan, Carroll, Andrew, Shafin, Kishwar |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Cold Spring Harbor Laboratory
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10515762/ https://www.ncbi.nlm.nih.gov/pubmed/37745389 http://dx.doi.org/10.1101/2023.09.07.556731 |
Ejemplares similares
-
Haplotype-aware variant calling with PEPPER-Margin-DeepVariant enables high accuracy in nanopore long-reads
por: Shafin, Kishwar, et al.
Publicado: (2021) -
Accelerated identification of disease-causing variants with ultra-rapid nanopore genome sequencing
por: Goenka, Sneha D., et al.
Publicado: (2022) -
Haplotag: Software for Haplotype-Based Genotyping-by-Sequencing Analysis
por: Tinker, Nicholas A., et al.
Publicado: (2016) -
HAT: de novo variant calling for highly accurate short-read and long-read sequencing data
por: Ng, Jeffrey K., et al.
Publicado: (2023) -
PrecisionFDA Truth Challenge V2: Calling variants from short and long reads in difficult-to-map regions
por: Olson, Nathan D., et al.
Publicado: (2022)