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Predicting global distributions of eukaryotic plankton communities from satellite data

Satellite remote sensing is a powerful tool to monitor the global dynamics of marine plankton. Previous research has focused on developing models to predict the size or taxonomic groups of phytoplankton. Here, we present an approach to identify community types from a global plankton network that inc...

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Autores principales: Kaneko, Hiroto, Endo, Hisashi, Henry, Nicolas, Berney, Cédric, Mahé, Frédéric, Poulain, Julie, Labadie, Karine, Beluche, Odette, El Hourany, Roy, Chaffron, Samuel, Wincker, Patrick, Nakamura, Ryosuke, Karp-Boss, Lee, Boss, Emmanuel, Bowler, Chris, de Vargas, Colomban, Tomii, Kentaro, Ogata, Hiroyuki
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10517053/
https://www.ncbi.nlm.nih.gov/pubmed/37740029
http://dx.doi.org/10.1038/s43705-023-00308-7
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author Kaneko, Hiroto
Endo, Hisashi
Henry, Nicolas
Berney, Cédric
Mahé, Frédéric
Poulain, Julie
Labadie, Karine
Beluche, Odette
El Hourany, Roy
Chaffron, Samuel
Wincker, Patrick
Nakamura, Ryosuke
Karp-Boss, Lee
Boss, Emmanuel
Bowler, Chris
de Vargas, Colomban
Tomii, Kentaro
Ogata, Hiroyuki
author_facet Kaneko, Hiroto
Endo, Hisashi
Henry, Nicolas
Berney, Cédric
Mahé, Frédéric
Poulain, Julie
Labadie, Karine
Beluche, Odette
El Hourany, Roy
Chaffron, Samuel
Wincker, Patrick
Nakamura, Ryosuke
Karp-Boss, Lee
Boss, Emmanuel
Bowler, Chris
de Vargas, Colomban
Tomii, Kentaro
Ogata, Hiroyuki
author_sort Kaneko, Hiroto
collection PubMed
description Satellite remote sensing is a powerful tool to monitor the global dynamics of marine plankton. Previous research has focused on developing models to predict the size or taxonomic groups of phytoplankton. Here, we present an approach to identify community types from a global plankton network that includes phytoplankton and heterotrophic protists and to predict their biogeography using global satellite observations. Six plankton community types were identified from a co-occurrence network inferred using a novel rDNA 18 S V4 planetary-scale eukaryotic metabarcoding dataset. Machine learning techniques were then applied to construct a model that predicted these community types from satellite data. The model showed an overall 67% accuracy in the prediction of the community types. The prediction using 17 satellite-derived parameters showed better performance than that using only temperature and/or the concentration of chlorophyll a. The constructed model predicted the global spatiotemporal distribution of community types over 19 years. The predicted distributions exhibited strong seasonal changes in community types in the subarctic–subtropical boundary regions, which were consistent with previous field observations. The model also identified the long-term trends in the distribution of community types, which suggested responses to ocean warming.
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spelling pubmed-105170532023-09-24 Predicting global distributions of eukaryotic plankton communities from satellite data Kaneko, Hiroto Endo, Hisashi Henry, Nicolas Berney, Cédric Mahé, Frédéric Poulain, Julie Labadie, Karine Beluche, Odette El Hourany, Roy Chaffron, Samuel Wincker, Patrick Nakamura, Ryosuke Karp-Boss, Lee Boss, Emmanuel Bowler, Chris de Vargas, Colomban Tomii, Kentaro Ogata, Hiroyuki ISME Commun Article Satellite remote sensing is a powerful tool to monitor the global dynamics of marine plankton. Previous research has focused on developing models to predict the size or taxonomic groups of phytoplankton. Here, we present an approach to identify community types from a global plankton network that includes phytoplankton and heterotrophic protists and to predict their biogeography using global satellite observations. Six plankton community types were identified from a co-occurrence network inferred using a novel rDNA 18 S V4 planetary-scale eukaryotic metabarcoding dataset. Machine learning techniques were then applied to construct a model that predicted these community types from satellite data. The model showed an overall 67% accuracy in the prediction of the community types. The prediction using 17 satellite-derived parameters showed better performance than that using only temperature and/or the concentration of chlorophyll a. The constructed model predicted the global spatiotemporal distribution of community types over 19 years. The predicted distributions exhibited strong seasonal changes in community types in the subarctic–subtropical boundary regions, which were consistent with previous field observations. The model also identified the long-term trends in the distribution of community types, which suggested responses to ocean warming. Nature Publishing Group UK 2023-09-22 /pmc/articles/PMC10517053/ /pubmed/37740029 http://dx.doi.org/10.1038/s43705-023-00308-7 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Kaneko, Hiroto
Endo, Hisashi
Henry, Nicolas
Berney, Cédric
Mahé, Frédéric
Poulain, Julie
Labadie, Karine
Beluche, Odette
El Hourany, Roy
Chaffron, Samuel
Wincker, Patrick
Nakamura, Ryosuke
Karp-Boss, Lee
Boss, Emmanuel
Bowler, Chris
de Vargas, Colomban
Tomii, Kentaro
Ogata, Hiroyuki
Predicting global distributions of eukaryotic plankton communities from satellite data
title Predicting global distributions of eukaryotic plankton communities from satellite data
title_full Predicting global distributions of eukaryotic plankton communities from satellite data
title_fullStr Predicting global distributions of eukaryotic plankton communities from satellite data
title_full_unstemmed Predicting global distributions of eukaryotic plankton communities from satellite data
title_short Predicting global distributions of eukaryotic plankton communities from satellite data
title_sort predicting global distributions of eukaryotic plankton communities from satellite data
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10517053/
https://www.ncbi.nlm.nih.gov/pubmed/37740029
http://dx.doi.org/10.1038/s43705-023-00308-7
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