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MDF-Net for abnormality detection by fusing X-rays with clinical data

This study investigates the effects of including patients’ clinical information on the performance of deep learning (DL) classifiers for disease location in chest X-ray images. Although current classifiers achieve high performance using chest X-ray images alone, consultations with practicing radiolo...

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Autores principales: Hsieh, Chihcheng, Nobre, Isabel Blanco, Sousa, Sandra Costa, Ouyang, Chun, Brereton, Margot, Nascimento, Jacinto C., Jorge, Joaquim, Moreira, Catarina
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10517966/
https://www.ncbi.nlm.nih.gov/pubmed/37741833
http://dx.doi.org/10.1038/s41598-023-41463-0
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author Hsieh, Chihcheng
Nobre, Isabel Blanco
Sousa, Sandra Costa
Ouyang, Chun
Brereton, Margot
Nascimento, Jacinto C.
Jorge, Joaquim
Moreira, Catarina
author_facet Hsieh, Chihcheng
Nobre, Isabel Blanco
Sousa, Sandra Costa
Ouyang, Chun
Brereton, Margot
Nascimento, Jacinto C.
Jorge, Joaquim
Moreira, Catarina
author_sort Hsieh, Chihcheng
collection PubMed
description This study investigates the effects of including patients’ clinical information on the performance of deep learning (DL) classifiers for disease location in chest X-ray images. Although current classifiers achieve high performance using chest X-ray images alone, consultations with practicing radiologists indicate that clinical data is highly informative and essential for interpreting medical images and making proper diagnoses. In this work, we propose a novel architecture consisting of two fusion methods that enable the model to simultaneously process patients’ clinical data (structured data) and chest X-rays (image data). Since these data modalities are in different dimensional spaces, we propose a spatial arrangement strategy, spatialization, to facilitate the multimodal learning process in a Mask R-CNN model. We performed an extensive experimental evaluation using MIMIC-Eye, a dataset comprising different modalities: MIMIC-CXR (chest X-ray images), MIMIC IV-ED (patients’ clinical data), and REFLACX (annotations of disease locations in chest X-rays). Results show that incorporating patients’ clinical data in a DL model together with the proposed fusion methods improves the disease localization in chest X-rays by 12% in terms of Average Precision compared to a standard Mask R-CNN using chest X-rays alone. Further ablation studies also emphasize the importance of multimodal DL architectures and the incorporation of patients’ clinical data in disease localization. In the interest of fostering scientific reproducibility, the architecture proposed within this investigation has been made publicly accessible(https://github.com/ChihchengHsieh/multimodal-abnormalities-detection).
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spelling pubmed-105179662023-09-25 MDF-Net for abnormality detection by fusing X-rays with clinical data Hsieh, Chihcheng Nobre, Isabel Blanco Sousa, Sandra Costa Ouyang, Chun Brereton, Margot Nascimento, Jacinto C. Jorge, Joaquim Moreira, Catarina Sci Rep Article This study investigates the effects of including patients’ clinical information on the performance of deep learning (DL) classifiers for disease location in chest X-ray images. Although current classifiers achieve high performance using chest X-ray images alone, consultations with practicing radiologists indicate that clinical data is highly informative and essential for interpreting medical images and making proper diagnoses. In this work, we propose a novel architecture consisting of two fusion methods that enable the model to simultaneously process patients’ clinical data (structured data) and chest X-rays (image data). Since these data modalities are in different dimensional spaces, we propose a spatial arrangement strategy, spatialization, to facilitate the multimodal learning process in a Mask R-CNN model. We performed an extensive experimental evaluation using MIMIC-Eye, a dataset comprising different modalities: MIMIC-CXR (chest X-ray images), MIMIC IV-ED (patients’ clinical data), and REFLACX (annotations of disease locations in chest X-rays). Results show that incorporating patients’ clinical data in a DL model together with the proposed fusion methods improves the disease localization in chest X-rays by 12% in terms of Average Precision compared to a standard Mask R-CNN using chest X-rays alone. Further ablation studies also emphasize the importance of multimodal DL architectures and the incorporation of patients’ clinical data in disease localization. In the interest of fostering scientific reproducibility, the architecture proposed within this investigation has been made publicly accessible(https://github.com/ChihchengHsieh/multimodal-abnormalities-detection). Nature Publishing Group UK 2023-09-23 /pmc/articles/PMC10517966/ /pubmed/37741833 http://dx.doi.org/10.1038/s41598-023-41463-0 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Hsieh, Chihcheng
Nobre, Isabel Blanco
Sousa, Sandra Costa
Ouyang, Chun
Brereton, Margot
Nascimento, Jacinto C.
Jorge, Joaquim
Moreira, Catarina
MDF-Net for abnormality detection by fusing X-rays with clinical data
title MDF-Net for abnormality detection by fusing X-rays with clinical data
title_full MDF-Net for abnormality detection by fusing X-rays with clinical data
title_fullStr MDF-Net for abnormality detection by fusing X-rays with clinical data
title_full_unstemmed MDF-Net for abnormality detection by fusing X-rays with clinical data
title_short MDF-Net for abnormality detection by fusing X-rays with clinical data
title_sort mdf-net for abnormality detection by fusing x-rays with clinical data
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10517966/
https://www.ncbi.nlm.nih.gov/pubmed/37741833
http://dx.doi.org/10.1038/s41598-023-41463-0
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