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MDF-Net for abnormality detection by fusing X-rays with clinical data
This study investigates the effects of including patients’ clinical information on the performance of deep learning (DL) classifiers for disease location in chest X-ray images. Although current classifiers achieve high performance using chest X-ray images alone, consultations with practicing radiolo...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10517966/ https://www.ncbi.nlm.nih.gov/pubmed/37741833 http://dx.doi.org/10.1038/s41598-023-41463-0 |
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author | Hsieh, Chihcheng Nobre, Isabel Blanco Sousa, Sandra Costa Ouyang, Chun Brereton, Margot Nascimento, Jacinto C. Jorge, Joaquim Moreira, Catarina |
author_facet | Hsieh, Chihcheng Nobre, Isabel Blanco Sousa, Sandra Costa Ouyang, Chun Brereton, Margot Nascimento, Jacinto C. Jorge, Joaquim Moreira, Catarina |
author_sort | Hsieh, Chihcheng |
collection | PubMed |
description | This study investigates the effects of including patients’ clinical information on the performance of deep learning (DL) classifiers for disease location in chest X-ray images. Although current classifiers achieve high performance using chest X-ray images alone, consultations with practicing radiologists indicate that clinical data is highly informative and essential for interpreting medical images and making proper diagnoses. In this work, we propose a novel architecture consisting of two fusion methods that enable the model to simultaneously process patients’ clinical data (structured data) and chest X-rays (image data). Since these data modalities are in different dimensional spaces, we propose a spatial arrangement strategy, spatialization, to facilitate the multimodal learning process in a Mask R-CNN model. We performed an extensive experimental evaluation using MIMIC-Eye, a dataset comprising different modalities: MIMIC-CXR (chest X-ray images), MIMIC IV-ED (patients’ clinical data), and REFLACX (annotations of disease locations in chest X-rays). Results show that incorporating patients’ clinical data in a DL model together with the proposed fusion methods improves the disease localization in chest X-rays by 12% in terms of Average Precision compared to a standard Mask R-CNN using chest X-rays alone. Further ablation studies also emphasize the importance of multimodal DL architectures and the incorporation of patients’ clinical data in disease localization. In the interest of fostering scientific reproducibility, the architecture proposed within this investigation has been made publicly accessible(https://github.com/ChihchengHsieh/multimodal-abnormalities-detection). |
format | Online Article Text |
id | pubmed-10517966 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-105179662023-09-25 MDF-Net for abnormality detection by fusing X-rays with clinical data Hsieh, Chihcheng Nobre, Isabel Blanco Sousa, Sandra Costa Ouyang, Chun Brereton, Margot Nascimento, Jacinto C. Jorge, Joaquim Moreira, Catarina Sci Rep Article This study investigates the effects of including patients’ clinical information on the performance of deep learning (DL) classifiers for disease location in chest X-ray images. Although current classifiers achieve high performance using chest X-ray images alone, consultations with practicing radiologists indicate that clinical data is highly informative and essential for interpreting medical images and making proper diagnoses. In this work, we propose a novel architecture consisting of two fusion methods that enable the model to simultaneously process patients’ clinical data (structured data) and chest X-rays (image data). Since these data modalities are in different dimensional spaces, we propose a spatial arrangement strategy, spatialization, to facilitate the multimodal learning process in a Mask R-CNN model. We performed an extensive experimental evaluation using MIMIC-Eye, a dataset comprising different modalities: MIMIC-CXR (chest X-ray images), MIMIC IV-ED (patients’ clinical data), and REFLACX (annotations of disease locations in chest X-rays). Results show that incorporating patients’ clinical data in a DL model together with the proposed fusion methods improves the disease localization in chest X-rays by 12% in terms of Average Precision compared to a standard Mask R-CNN using chest X-rays alone. Further ablation studies also emphasize the importance of multimodal DL architectures and the incorporation of patients’ clinical data in disease localization. In the interest of fostering scientific reproducibility, the architecture proposed within this investigation has been made publicly accessible(https://github.com/ChihchengHsieh/multimodal-abnormalities-detection). Nature Publishing Group UK 2023-09-23 /pmc/articles/PMC10517966/ /pubmed/37741833 http://dx.doi.org/10.1038/s41598-023-41463-0 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Hsieh, Chihcheng Nobre, Isabel Blanco Sousa, Sandra Costa Ouyang, Chun Brereton, Margot Nascimento, Jacinto C. Jorge, Joaquim Moreira, Catarina MDF-Net for abnormality detection by fusing X-rays with clinical data |
title | MDF-Net for abnormality detection by fusing X-rays with clinical data |
title_full | MDF-Net for abnormality detection by fusing X-rays with clinical data |
title_fullStr | MDF-Net for abnormality detection by fusing X-rays with clinical data |
title_full_unstemmed | MDF-Net for abnormality detection by fusing X-rays with clinical data |
title_short | MDF-Net for abnormality detection by fusing X-rays with clinical data |
title_sort | mdf-net for abnormality detection by fusing x-rays with clinical data |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10517966/ https://www.ncbi.nlm.nih.gov/pubmed/37741833 http://dx.doi.org/10.1038/s41598-023-41463-0 |
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