bubbleHeatmap: an R package for visualization of Nightingale Health metabolomics datasets

SUMMARY: We present bubbleHeatmap, an R plotting package which combines elements of a bubble plot and heatmap to conveniently display two numerical variables for each data point across a categorical two dimensional grid. This has particular advantages for visualizing the 251 metabolomic measures pro...

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Detalles Bibliográficos
Autores principales: Boxall, Ruth, Holmes, Michael V, Walters, Robin G
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Application Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10518075/
https://www.ncbi.nlm.nih.gov/pubmed/37750069
http://dx.doi.org/10.1093/bioadv/vbad123
Descripción
Sumario:SUMMARY: We present bubbleHeatmap, an R plotting package which combines elements of a bubble plot and heatmap to conveniently display two numerical variables for each data point across a categorical two dimensional grid. This has particular advantages for visualizing the 251 metabolomic measures produced by the automated, high-throughput, (1)H-NMR-based platform provided by Nightingale Health, which includes 12 measures repeated across each of 14 lipoprotein subclasses. As these metabolomic profiles are currently available for large biobanks, we provide a figure template to aid the use of bubbleHeatmap in displaying results from analyses using these data. AVAILABILITY AND IMPLEMENTATION: https://cran.r-project.org/web/packages/bubbleHeatmap

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