bubbleHeatmap: an R package for visualization of Nightingale Health metabolomics datasets

SUMMARY: We present bubbleHeatmap, an R plotting package which combines elements of a bubble plot and heatmap to conveniently display two numerical variables for each data point across a categorical two dimensional grid. This has particular advantages for visualizing the 251 metabolomic measures pro...

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Detalles Bibliográficos
Autores principales: Boxall, Ruth, Holmes, Michael V, Walters, Robin G
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Application Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10518075/
https://www.ncbi.nlm.nih.gov/pubmed/37750069
http://dx.doi.org/10.1093/bioadv/vbad123
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author Boxall, Ruth
Holmes, Michael V
Walters, Robin G
author_facet Boxall, Ruth
Holmes, Michael V
Walters, Robin G
author_sort Boxall, Ruth
collection PubMed
description SUMMARY: We present bubbleHeatmap, an R plotting package which combines elements of a bubble plot and heatmap to conveniently display two numerical variables for each data point across a categorical two dimensional grid. This has particular advantages for visualizing the 251 metabolomic measures produced by the automated, high-throughput, (1)H-NMR-based platform provided by Nightingale Health, which includes 12 measures repeated across each of 14 lipoprotein subclasses. As these metabolomic profiles are currently available for large biobanks, we provide a figure template to aid the use of bubbleHeatmap in displaying results from analyses using these data. AVAILABILITY AND IMPLEMENTATION: https://cran.r-project.org/web/packages/bubbleHeatmap
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spelling pubmed-105180752023-09-25 bubbleHeatmap: an R package for visualization of Nightingale Health metabolomics datasets Boxall, Ruth Holmes, Michael V Walters, Robin G Bioinform Adv Application Note SUMMARY: We present bubbleHeatmap, an R plotting package which combines elements of a bubble plot and heatmap to conveniently display two numerical variables for each data point across a categorical two dimensional grid. This has particular advantages for visualizing the 251 metabolomic measures produced by the automated, high-throughput, (1)H-NMR-based platform provided by Nightingale Health, which includes 12 measures repeated across each of 14 lipoprotein subclasses. As these metabolomic profiles are currently available for large biobanks, we provide a figure template to aid the use of bubbleHeatmap in displaying results from analyses using these data. AVAILABILITY AND IMPLEMENTATION: https://cran.r-project.org/web/packages/bubbleHeatmap Oxford University Press 2023-09-12 /pmc/articles/PMC10518075/ /pubmed/37750069 http://dx.doi.org/10.1093/bioadv/vbad123 Text en © The Author(s) 2023. Published by Oxford University Press. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Application Note
Boxall, Ruth
Holmes, Michael V
Walters, Robin G
bubbleHeatmap: an R package for visualization of Nightingale Health metabolomics datasets
title bubbleHeatmap: an R package for visualization of Nightingale Health metabolomics datasets
title_full bubbleHeatmap: an R package for visualization of Nightingale Health metabolomics datasets
title_fullStr bubbleHeatmap: an R package for visualization of Nightingale Health metabolomics datasets
title_full_unstemmed bubbleHeatmap: an R package for visualization of Nightingale Health metabolomics datasets
title_short bubbleHeatmap: an R package for visualization of Nightingale Health metabolomics datasets
title_sort bubbleheatmap: an r package for visualization of nightingale health metabolomics datasets
topic Application Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10518075/
https://www.ncbi.nlm.nih.gov/pubmed/37750069
http://dx.doi.org/10.1093/bioadv/vbad123
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