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ToxRefDB v2.1: update to curated in vivo study data in the Toxicity Reference Database

The Toxicity Reference Database (ToxRefDB) contains in vivo study data from over 5,900 guideline or guideline-like studies for over 1,100 chemicals. The database includes information regarding study design, chemical treatment, dosing, treatment group parameters, treatment-related (significantly diff...

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Autores principales: Feshuk, Madison, Kolaczkowski, Lori, Watford, Sean, Paul Friedman, Katie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10518696/
https://www.ncbi.nlm.nih.gov/pubmed/37753522
http://dx.doi.org/10.3389/ftox.2023.1260305
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author Feshuk, Madison
Kolaczkowski, Lori
Watford, Sean
Paul Friedman, Katie
author_facet Feshuk, Madison
Kolaczkowski, Lori
Watford, Sean
Paul Friedman, Katie
author_sort Feshuk, Madison
collection PubMed
description The Toxicity Reference Database (ToxRefDB) contains in vivo study data from over 5,900 guideline or guideline-like studies for over 1,100 chemicals. The database includes information regarding study design, chemical treatment, dosing, treatment group parameters, treatment-related (significantly different from control) and critical (adverse) effects, guided by a controlled effect vocabulary, as well as endpoint testing status according to health effects guideline requirements. ToxRefDB v2.1 is an update to address a compilation error found in ToxRefDB v2.0 that resulted in some effects being inadvertently omitted from the database. Though effect data has been recovered, no new studies were added. The recovered data improves the utility of ToxRefDB as a resource for curated legacy in vivo information, which enhances scientific confidence in vitro high-throughput screening of chemicals and supports retrospective and predictive toxicology applications for which outcomes in traditional regulatory toxicology studies serve as reference information.
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spelling pubmed-105186962023-09-26 ToxRefDB v2.1: update to curated in vivo study data in the Toxicity Reference Database Feshuk, Madison Kolaczkowski, Lori Watford, Sean Paul Friedman, Katie Front Toxicol Toxicology The Toxicity Reference Database (ToxRefDB) contains in vivo study data from over 5,900 guideline or guideline-like studies for over 1,100 chemicals. The database includes information regarding study design, chemical treatment, dosing, treatment group parameters, treatment-related (significantly different from control) and critical (adverse) effects, guided by a controlled effect vocabulary, as well as endpoint testing status according to health effects guideline requirements. ToxRefDB v2.1 is an update to address a compilation error found in ToxRefDB v2.0 that resulted in some effects being inadvertently omitted from the database. Though effect data has been recovered, no new studies were added. The recovered data improves the utility of ToxRefDB as a resource for curated legacy in vivo information, which enhances scientific confidence in vitro high-throughput screening of chemicals and supports retrospective and predictive toxicology applications for which outcomes in traditional regulatory toxicology studies serve as reference information. Frontiers Media S.A. 2023-09-11 /pmc/articles/PMC10518696/ /pubmed/37753522 http://dx.doi.org/10.3389/ftox.2023.1260305 Text en Copyright © 2023 Feshuk, Kolaczkowski, Watford and Paul Friedman. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Toxicology
Feshuk, Madison
Kolaczkowski, Lori
Watford, Sean
Paul Friedman, Katie
ToxRefDB v2.1: update to curated in vivo study data in the Toxicity Reference Database
title ToxRefDB v2.1: update to curated in vivo study data in the Toxicity Reference Database
title_full ToxRefDB v2.1: update to curated in vivo study data in the Toxicity Reference Database
title_fullStr ToxRefDB v2.1: update to curated in vivo study data in the Toxicity Reference Database
title_full_unstemmed ToxRefDB v2.1: update to curated in vivo study data in the Toxicity Reference Database
title_short ToxRefDB v2.1: update to curated in vivo study data in the Toxicity Reference Database
title_sort toxrefdb v2.1: update to curated in vivo study data in the toxicity reference database
topic Toxicology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10518696/
https://www.ncbi.nlm.nih.gov/pubmed/37753522
http://dx.doi.org/10.3389/ftox.2023.1260305
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