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Data sets of human and mouse protein kinase inhibitors with curated activity data including covalent inhibitors
AIM: Generation of high-quality data sets of protein kinase inhibitors (PKIs). METHODOLOGY: Publicly available PKIs with reliable activity data were curated. PKIs with very weak activity were classified as inactive. Analogue series and PKIs containing reactive groups (warheads) enabling covalent inh...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Future Science Ltd
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10518807/ https://www.ncbi.nlm.nih.gov/pubmed/37752915 http://dx.doi.org/10.2144/fsoa-2023-0088 |
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author | Xerxa, Elena Bajorath, Jürgen |
author_facet | Xerxa, Elena Bajorath, Jürgen |
author_sort | Xerxa, Elena |
collection | PubMed |
description | AIM: Generation of high-quality data sets of protein kinase inhibitors (PKIs). METHODOLOGY: Publicly available PKIs with reliable activity data were curated. PKIs with very weak activity were classified as inactive. Analogue series and PKIs containing reactive groups (warheads) enabling covalent inhibition were systematically identified. EXEMPLARY RESULTS & DATA: A total of 155,579 human and 3057 mouse PKIs were obtained. Human PKIs were active 440 kinases and included 13,949 covalent PKIs. The collection of qualifying PKIs and corresponding inactive compounds is made available as an open access deposition. LIMITATIONS & NEXT STEPS: Potential limitations include activity data incompleteness and assay variance. The data set can be used to investigate PKIs with alternative modes of action and calibrate computational methods. |
format | Online Article Text |
id | pubmed-10518807 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Future Science Ltd |
record_format | MEDLINE/PubMed |
spelling | pubmed-105188072023-09-26 Data sets of human and mouse protein kinase inhibitors with curated activity data including covalent inhibitors Xerxa, Elena Bajorath, Jürgen Future Sci OA Data Note AIM: Generation of high-quality data sets of protein kinase inhibitors (PKIs). METHODOLOGY: Publicly available PKIs with reliable activity data were curated. PKIs with very weak activity were classified as inactive. Analogue series and PKIs containing reactive groups (warheads) enabling covalent inhibition were systematically identified. EXEMPLARY RESULTS & DATA: A total of 155,579 human and 3057 mouse PKIs were obtained. Human PKIs were active 440 kinases and included 13,949 covalent PKIs. The collection of qualifying PKIs and corresponding inactive compounds is made available as an open access deposition. LIMITATIONS & NEXT STEPS: Potential limitations include activity data incompleteness and assay variance. The data set can be used to investigate PKIs with alternative modes of action and calibrate computational methods. Future Science Ltd 2023-08-16 /pmc/articles/PMC10518807/ /pubmed/37752915 http://dx.doi.org/10.2144/fsoa-2023-0088 Text en © 2023 Jürgen Bajorath, Elena Xerxa https://creativecommons.org/licenses/by/4.0/This work is licensed under the Creative Commons Attribution 4.0 License (https://creativecommons.org/licenses/by/4.0/) |
spellingShingle | Data Note Xerxa, Elena Bajorath, Jürgen Data sets of human and mouse protein kinase inhibitors with curated activity data including covalent inhibitors |
title | Data sets of human and mouse protein kinase inhibitors with curated activity data including covalent inhibitors |
title_full | Data sets of human and mouse protein kinase inhibitors with curated activity data including covalent inhibitors |
title_fullStr | Data sets of human and mouse protein kinase inhibitors with curated activity data including covalent inhibitors |
title_full_unstemmed | Data sets of human and mouse protein kinase inhibitors with curated activity data including covalent inhibitors |
title_short | Data sets of human and mouse protein kinase inhibitors with curated activity data including covalent inhibitors |
title_sort | data sets of human and mouse protein kinase inhibitors with curated activity data including covalent inhibitors |
topic | Data Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10518807/ https://www.ncbi.nlm.nih.gov/pubmed/37752915 http://dx.doi.org/10.2144/fsoa-2023-0088 |
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