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Characteristics and phylogenetic analysis of the complete chloroplast genome of Primulina hedyotidea
Primulina hedyotidea (Woon Young Chun) Yin Zheng Wang 2011 is an important medicinal plant that has a long history of medicinal use in China. In this experiment, the whole chloroplast genome of P. hedyotidea was determined by next-generation sequencing technology. The total base length of P. hedyoti...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10519256/ https://www.ncbi.nlm.nih.gov/pubmed/37753244 http://dx.doi.org/10.1080/23802359.2023.2238932 |
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author | Wen, Haicheng Su, Yongjing Xie, Ao Lin, Chen Wei, Wei |
author_facet | Wen, Haicheng Su, Yongjing Xie, Ao Lin, Chen Wei, Wei |
author_sort | Wen, Haicheng |
collection | PubMed |
description | Primulina hedyotidea (Woon Young Chun) Yin Zheng Wang 2011 is an important medicinal plant that has a long history of medicinal use in China. In this experiment, the whole chloroplast genome of P. hedyotidea was determined by next-generation sequencing technology. The total base length of P. hedyotidea was 153,297 bp, the GC content was 37.62%, the inverted repeat (IR) region length was 25,494 bp, the large single copy (LSC) region was 84,158 bp and the small single copy (SSC) region was 18,151 bp. In addition, the genome consisted of 80 protein-coding genes, 4 rRNA genes, and 28 tRNA genes, for a total of 112 genes. A phylogenetic tree was constructed to explore the evolutionary relationship between P. hedyotidea and other species. The findings of phylogenetic tree analysis show that Primulina huaijiensis and P. hedyotidea have a close relationship, and this study can help with species identification and phylogenetic analysis within Primulina and Gesneriaceae species. |
format | Online Article Text |
id | pubmed-10519256 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-105192562023-09-26 Characteristics and phylogenetic analysis of the complete chloroplast genome of Primulina hedyotidea Wen, Haicheng Su, Yongjing Xie, Ao Lin, Chen Wei, Wei Mitochondrial DNA B Resour MitoGenome Announcement Primulina hedyotidea (Woon Young Chun) Yin Zheng Wang 2011 is an important medicinal plant that has a long history of medicinal use in China. In this experiment, the whole chloroplast genome of P. hedyotidea was determined by next-generation sequencing technology. The total base length of P. hedyotidea was 153,297 bp, the GC content was 37.62%, the inverted repeat (IR) region length was 25,494 bp, the large single copy (LSC) region was 84,158 bp and the small single copy (SSC) region was 18,151 bp. In addition, the genome consisted of 80 protein-coding genes, 4 rRNA genes, and 28 tRNA genes, for a total of 112 genes. A phylogenetic tree was constructed to explore the evolutionary relationship between P. hedyotidea and other species. The findings of phylogenetic tree analysis show that Primulina huaijiensis and P. hedyotidea have a close relationship, and this study can help with species identification and phylogenetic analysis within Primulina and Gesneriaceae species. Taylor & Francis 2023-09-23 /pmc/articles/PMC10519256/ /pubmed/37753244 http://dx.doi.org/10.1080/23802359.2023.2238932 Text en © 2023 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. The terms on which this article has been published allow the posting of the Accepted Manuscript in a repository by the author(s) or with their consent. |
spellingShingle | MitoGenome Announcement Wen, Haicheng Su, Yongjing Xie, Ao Lin, Chen Wei, Wei Characteristics and phylogenetic analysis of the complete chloroplast genome of Primulina hedyotidea |
title | Characteristics and phylogenetic analysis of the complete chloroplast genome of Primulina hedyotidea |
title_full | Characteristics and phylogenetic analysis of the complete chloroplast genome of Primulina hedyotidea |
title_fullStr | Characteristics and phylogenetic analysis of the complete chloroplast genome of Primulina hedyotidea |
title_full_unstemmed | Characteristics and phylogenetic analysis of the complete chloroplast genome of Primulina hedyotidea |
title_short | Characteristics and phylogenetic analysis of the complete chloroplast genome of Primulina hedyotidea |
title_sort | characteristics and phylogenetic analysis of the complete chloroplast genome of primulina hedyotidea |
topic | MitoGenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10519256/ https://www.ncbi.nlm.nih.gov/pubmed/37753244 http://dx.doi.org/10.1080/23802359.2023.2238932 |
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