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Deep learning-enabled realistic virtual histology with ultraviolet photoacoustic remote sensing microscopy
The goal of oncologic surgeries is complete tumor resection, yet positive margins are frequently found postoperatively using gold standard H&E-stained histology methods. Frozen section analysis is sometimes performed for rapid intraoperative margin evaluation, albeit with known inaccuracies. Her...
Autores principales: | , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10519961/ https://www.ncbi.nlm.nih.gov/pubmed/37749108 http://dx.doi.org/10.1038/s41467-023-41574-2 |
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author | Martell, Matthew T. Haven, Nathaniel J. M. Cikaluk, Brendyn D. Restall, Brendon S. McAlister, Ewan A. Mittal, Rohan Adam, Benjamin A. Giannakopoulos, Nadia Peiris, Lashan Silverman, Sveta Deschenes, Jean Li, Xingyu Zemp, Roger J. |
author_facet | Martell, Matthew T. Haven, Nathaniel J. M. Cikaluk, Brendyn D. Restall, Brendon S. McAlister, Ewan A. Mittal, Rohan Adam, Benjamin A. Giannakopoulos, Nadia Peiris, Lashan Silverman, Sveta Deschenes, Jean Li, Xingyu Zemp, Roger J. |
author_sort | Martell, Matthew T. |
collection | PubMed |
description | The goal of oncologic surgeries is complete tumor resection, yet positive margins are frequently found postoperatively using gold standard H&E-stained histology methods. Frozen section analysis is sometimes performed for rapid intraoperative margin evaluation, albeit with known inaccuracies. Here, we introduce a label-free histological imaging method based on an ultraviolet photoacoustic remote sensing and scattering microscope, combined with unsupervised deep learning using a cycle-consistent generative adversarial network for realistic virtual staining. Unstained tissues are scanned at rates of up to 7 mins/cm(2), at resolution equivalent to 400x digital histopathology. Quantitative validation suggests strong concordance with conventional histology in benign and malignant prostate and breast tissues. In diagnostic utility studies we demonstrate a mean sensitivity and specificity of 0.96 and 0.91 in breast specimens, and respectively 0.87 and 0.94 in prostate specimens. We also find virtual stain quality is preferred (P = 0.03) compared to frozen section analysis in a blinded survey of pathologists. |
format | Online Article Text |
id | pubmed-10519961 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-105199612023-09-27 Deep learning-enabled realistic virtual histology with ultraviolet photoacoustic remote sensing microscopy Martell, Matthew T. Haven, Nathaniel J. M. Cikaluk, Brendyn D. Restall, Brendon S. McAlister, Ewan A. Mittal, Rohan Adam, Benjamin A. Giannakopoulos, Nadia Peiris, Lashan Silverman, Sveta Deschenes, Jean Li, Xingyu Zemp, Roger J. Nat Commun Article The goal of oncologic surgeries is complete tumor resection, yet positive margins are frequently found postoperatively using gold standard H&E-stained histology methods. Frozen section analysis is sometimes performed for rapid intraoperative margin evaluation, albeit with known inaccuracies. Here, we introduce a label-free histological imaging method based on an ultraviolet photoacoustic remote sensing and scattering microscope, combined with unsupervised deep learning using a cycle-consistent generative adversarial network for realistic virtual staining. Unstained tissues are scanned at rates of up to 7 mins/cm(2), at resolution equivalent to 400x digital histopathology. Quantitative validation suggests strong concordance with conventional histology in benign and malignant prostate and breast tissues. In diagnostic utility studies we demonstrate a mean sensitivity and specificity of 0.96 and 0.91 in breast specimens, and respectively 0.87 and 0.94 in prostate specimens. We also find virtual stain quality is preferred (P = 0.03) compared to frozen section analysis in a blinded survey of pathologists. Nature Publishing Group UK 2023-09-25 /pmc/articles/PMC10519961/ /pubmed/37749108 http://dx.doi.org/10.1038/s41467-023-41574-2 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Martell, Matthew T. Haven, Nathaniel J. M. Cikaluk, Brendyn D. Restall, Brendon S. McAlister, Ewan A. Mittal, Rohan Adam, Benjamin A. Giannakopoulos, Nadia Peiris, Lashan Silverman, Sveta Deschenes, Jean Li, Xingyu Zemp, Roger J. Deep learning-enabled realistic virtual histology with ultraviolet photoacoustic remote sensing microscopy |
title | Deep learning-enabled realistic virtual histology with ultraviolet photoacoustic remote sensing microscopy |
title_full | Deep learning-enabled realistic virtual histology with ultraviolet photoacoustic remote sensing microscopy |
title_fullStr | Deep learning-enabled realistic virtual histology with ultraviolet photoacoustic remote sensing microscopy |
title_full_unstemmed | Deep learning-enabled realistic virtual histology with ultraviolet photoacoustic remote sensing microscopy |
title_short | Deep learning-enabled realistic virtual histology with ultraviolet photoacoustic remote sensing microscopy |
title_sort | deep learning-enabled realistic virtual histology with ultraviolet photoacoustic remote sensing microscopy |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10519961/ https://www.ncbi.nlm.nih.gov/pubmed/37749108 http://dx.doi.org/10.1038/s41467-023-41574-2 |
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