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Pancreatic cancer grading in pathological images using deep learning convolutional neural networks

Background: Pancreatic cancer is one of the deadliest forms of cancer. The cancer grades define how aggressively the cancer will spread and give indication for doctors to make proper prognosis and treatment. The current method of pancreatic cancer grading, by means of manual examination of the cance...

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Autores principales: Mohamad Sehmi, Muhammad Nurmahir, Ahmad Fauzi, Mohammad Faizal, Wan Ahmad, Wan Siti Halimatul Munirah, Wan Ling Chan, Elaine
Formato: Online Artículo Texto
Lenguaje:English
Publicado: F1000 Research Limited 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10521057/
https://www.ncbi.nlm.nih.gov/pubmed/37767358
http://dx.doi.org/10.12688/f1000research.73161.2
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author Mohamad Sehmi, Muhammad Nurmahir
Ahmad Fauzi, Mohammad Faizal
Wan Ahmad, Wan Siti Halimatul Munirah
Wan Ling Chan, Elaine
author_facet Mohamad Sehmi, Muhammad Nurmahir
Ahmad Fauzi, Mohammad Faizal
Wan Ahmad, Wan Siti Halimatul Munirah
Wan Ling Chan, Elaine
author_sort Mohamad Sehmi, Muhammad Nurmahir
collection PubMed
description Background: Pancreatic cancer is one of the deadliest forms of cancer. The cancer grades define how aggressively the cancer will spread and give indication for doctors to make proper prognosis and treatment. The current method of pancreatic cancer grading, by means of manual examination of the cancerous tissue following a biopsy, is time consuming and often results in misdiagnosis and thus incorrect treatment. This paper presents an automated grading system for pancreatic cancer from pathology images developed by comparing deep learning models on two different pathological stains. Methods: A transfer-learning technique was adopted by testing the method on 14 different ImageNet pre-trained models. The models were fine-tuned to be trained with our dataset. Results: From the experiment, DenseNet models appeared to be the best at classifying the validation set with up to 95.61% accuracy in grading pancreatic cancer despite the small sample set. Conclusions: To the best of our knowledge, this is the first work in grading pancreatic cancer based on pathology images. Previous works have either focused only on detection (benign or malignant), or on radiology images (computerized tomography [CT], magnetic resonance imaging [MRI] etc.). The proposed system can be very useful to pathologists in facilitating an automated or semi-automated cancer grading system, which can address the problems found in manual grading.
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spelling pubmed-105210572023-09-27 Pancreatic cancer grading in pathological images using deep learning convolutional neural networks Mohamad Sehmi, Muhammad Nurmahir Ahmad Fauzi, Mohammad Faizal Wan Ahmad, Wan Siti Halimatul Munirah Wan Ling Chan, Elaine F1000Res Research Article Background: Pancreatic cancer is one of the deadliest forms of cancer. The cancer grades define how aggressively the cancer will spread and give indication for doctors to make proper prognosis and treatment. The current method of pancreatic cancer grading, by means of manual examination of the cancerous tissue following a biopsy, is time consuming and often results in misdiagnosis and thus incorrect treatment. This paper presents an automated grading system for pancreatic cancer from pathology images developed by comparing deep learning models on two different pathological stains. Methods: A transfer-learning technique was adopted by testing the method on 14 different ImageNet pre-trained models. The models were fine-tuned to be trained with our dataset. Results: From the experiment, DenseNet models appeared to be the best at classifying the validation set with up to 95.61% accuracy in grading pancreatic cancer despite the small sample set. Conclusions: To the best of our knowledge, this is the first work in grading pancreatic cancer based on pathology images. Previous works have either focused only on detection (benign or malignant), or on radiology images (computerized tomography [CT], magnetic resonance imaging [MRI] etc.). The proposed system can be very useful to pathologists in facilitating an automated or semi-automated cancer grading system, which can address the problems found in manual grading. F1000 Research Limited 2022-11-01 /pmc/articles/PMC10521057/ /pubmed/37767358 http://dx.doi.org/10.12688/f1000research.73161.2 Text en Copyright: © 2022 Mohamad Sehmi MN et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Mohamad Sehmi, Muhammad Nurmahir
Ahmad Fauzi, Mohammad Faizal
Wan Ahmad, Wan Siti Halimatul Munirah
Wan Ling Chan, Elaine
Pancreatic cancer grading in pathological images using deep learning convolutional neural networks
title Pancreatic cancer grading in pathological images using deep learning convolutional neural networks
title_full Pancreatic cancer grading in pathological images using deep learning convolutional neural networks
title_fullStr Pancreatic cancer grading in pathological images using deep learning convolutional neural networks
title_full_unstemmed Pancreatic cancer grading in pathological images using deep learning convolutional neural networks
title_short Pancreatic cancer grading in pathological images using deep learning convolutional neural networks
title_sort pancreatic cancer grading in pathological images using deep learning convolutional neural networks
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10521057/
https://www.ncbi.nlm.nih.gov/pubmed/37767358
http://dx.doi.org/10.12688/f1000research.73161.2
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