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Pancreatic cancer grading in pathological images using deep learning convolutional neural networks
Background: Pancreatic cancer is one of the deadliest forms of cancer. The cancer grades define how aggressively the cancer will spread and give indication for doctors to make proper prognosis and treatment. The current method of pancreatic cancer grading, by means of manual examination of the cance...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
F1000 Research Limited
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10521057/ https://www.ncbi.nlm.nih.gov/pubmed/37767358 http://dx.doi.org/10.12688/f1000research.73161.2 |
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author | Mohamad Sehmi, Muhammad Nurmahir Ahmad Fauzi, Mohammad Faizal Wan Ahmad, Wan Siti Halimatul Munirah Wan Ling Chan, Elaine |
author_facet | Mohamad Sehmi, Muhammad Nurmahir Ahmad Fauzi, Mohammad Faizal Wan Ahmad, Wan Siti Halimatul Munirah Wan Ling Chan, Elaine |
author_sort | Mohamad Sehmi, Muhammad Nurmahir |
collection | PubMed |
description | Background: Pancreatic cancer is one of the deadliest forms of cancer. The cancer grades define how aggressively the cancer will spread and give indication for doctors to make proper prognosis and treatment. The current method of pancreatic cancer grading, by means of manual examination of the cancerous tissue following a biopsy, is time consuming and often results in misdiagnosis and thus incorrect treatment. This paper presents an automated grading system for pancreatic cancer from pathology images developed by comparing deep learning models on two different pathological stains. Methods: A transfer-learning technique was adopted by testing the method on 14 different ImageNet pre-trained models. The models were fine-tuned to be trained with our dataset. Results: From the experiment, DenseNet models appeared to be the best at classifying the validation set with up to 95.61% accuracy in grading pancreatic cancer despite the small sample set. Conclusions: To the best of our knowledge, this is the first work in grading pancreatic cancer based on pathology images. Previous works have either focused only on detection (benign or malignant), or on radiology images (computerized tomography [CT], magnetic resonance imaging [MRI] etc.). The proposed system can be very useful to pathologists in facilitating an automated or semi-automated cancer grading system, which can address the problems found in manual grading. |
format | Online Article Text |
id | pubmed-10521057 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | F1000 Research Limited |
record_format | MEDLINE/PubMed |
spelling | pubmed-105210572023-09-27 Pancreatic cancer grading in pathological images using deep learning convolutional neural networks Mohamad Sehmi, Muhammad Nurmahir Ahmad Fauzi, Mohammad Faizal Wan Ahmad, Wan Siti Halimatul Munirah Wan Ling Chan, Elaine F1000Res Research Article Background: Pancreatic cancer is one of the deadliest forms of cancer. The cancer grades define how aggressively the cancer will spread and give indication for doctors to make proper prognosis and treatment. The current method of pancreatic cancer grading, by means of manual examination of the cancerous tissue following a biopsy, is time consuming and often results in misdiagnosis and thus incorrect treatment. This paper presents an automated grading system for pancreatic cancer from pathology images developed by comparing deep learning models on two different pathological stains. Methods: A transfer-learning technique was adopted by testing the method on 14 different ImageNet pre-trained models. The models were fine-tuned to be trained with our dataset. Results: From the experiment, DenseNet models appeared to be the best at classifying the validation set with up to 95.61% accuracy in grading pancreatic cancer despite the small sample set. Conclusions: To the best of our knowledge, this is the first work in grading pancreatic cancer based on pathology images. Previous works have either focused only on detection (benign or malignant), or on radiology images (computerized tomography [CT], magnetic resonance imaging [MRI] etc.). The proposed system can be very useful to pathologists in facilitating an automated or semi-automated cancer grading system, which can address the problems found in manual grading. F1000 Research Limited 2022-11-01 /pmc/articles/PMC10521057/ /pubmed/37767358 http://dx.doi.org/10.12688/f1000research.73161.2 Text en Copyright: © 2022 Mohamad Sehmi MN et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Mohamad Sehmi, Muhammad Nurmahir Ahmad Fauzi, Mohammad Faizal Wan Ahmad, Wan Siti Halimatul Munirah Wan Ling Chan, Elaine Pancreatic cancer grading in pathological images using deep learning convolutional neural networks |
title | Pancreatic cancer grading in pathological images using deep learning convolutional neural networks |
title_full | Pancreatic cancer grading in pathological images using deep learning convolutional neural networks |
title_fullStr | Pancreatic cancer grading in pathological images using deep learning convolutional neural networks |
title_full_unstemmed | Pancreatic cancer grading in pathological images using deep learning convolutional neural networks |
title_short | Pancreatic cancer grading in pathological images using deep learning convolutional neural networks |
title_sort | pancreatic cancer grading in pathological images using deep learning convolutional neural networks |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10521057/ https://www.ncbi.nlm.nih.gov/pubmed/37767358 http://dx.doi.org/10.12688/f1000research.73161.2 |
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