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Application of single-cell multi-omics approaches in horticulture research

Cell heterogeneity shapes the morphology and function of various tissues and organs in multicellular organisms. Elucidation of the differences among cells and the mechanism of intercellular regulation is essential for an in-depth understanding of the developmental process. In recent years, the rapid...

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Autores principales: Zhang, Jun, Ahmad, Mayra, Gao, Hongbo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10521458/
https://www.ncbi.nlm.nih.gov/pubmed/37789394
http://dx.doi.org/10.1186/s43897-023-00067-y
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author Zhang, Jun
Ahmad, Mayra
Gao, Hongbo
author_facet Zhang, Jun
Ahmad, Mayra
Gao, Hongbo
author_sort Zhang, Jun
collection PubMed
description Cell heterogeneity shapes the morphology and function of various tissues and organs in multicellular organisms. Elucidation of the differences among cells and the mechanism of intercellular regulation is essential for an in-depth understanding of the developmental process. In recent years, the rapid development of high-throughput single-cell transcriptome sequencing technologies has influenced the study of plant developmental biology. Additionally, the accuracy and sensitivity of tools used to study the epigenome and metabolome have significantly increased, thus enabling multi-omics analysis at single-cell resolution. Here, we summarize the currently available single-cell multi-omics approaches and their recent applications in plant research, review the single-cell based studies in fruit, vegetable, and ornamental crops, and discuss the potential of such approaches in future horticulture research. GRAPHICAL ABSTRACT: [Image: see text]
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spelling pubmed-105214582023-09-27 Application of single-cell multi-omics approaches in horticulture research Zhang, Jun Ahmad, Mayra Gao, Hongbo Mol Hortic Review Cell heterogeneity shapes the morphology and function of various tissues and organs in multicellular organisms. Elucidation of the differences among cells and the mechanism of intercellular regulation is essential for an in-depth understanding of the developmental process. In recent years, the rapid development of high-throughput single-cell transcriptome sequencing technologies has influenced the study of plant developmental biology. Additionally, the accuracy and sensitivity of tools used to study the epigenome and metabolome have significantly increased, thus enabling multi-omics analysis at single-cell resolution. Here, we summarize the currently available single-cell multi-omics approaches and their recent applications in plant research, review the single-cell based studies in fruit, vegetable, and ornamental crops, and discuss the potential of such approaches in future horticulture research. GRAPHICAL ABSTRACT: [Image: see text] BioMed Central 2023-09-26 /pmc/articles/PMC10521458/ /pubmed/37789394 http://dx.doi.org/10.1186/s43897-023-00067-y Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Review
Zhang, Jun
Ahmad, Mayra
Gao, Hongbo
Application of single-cell multi-omics approaches in horticulture research
title Application of single-cell multi-omics approaches in horticulture research
title_full Application of single-cell multi-omics approaches in horticulture research
title_fullStr Application of single-cell multi-omics approaches in horticulture research
title_full_unstemmed Application of single-cell multi-omics approaches in horticulture research
title_short Application of single-cell multi-omics approaches in horticulture research
title_sort application of single-cell multi-omics approaches in horticulture research
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10521458/
https://www.ncbi.nlm.nih.gov/pubmed/37789394
http://dx.doi.org/10.1186/s43897-023-00067-y
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