Cargando…

Firalink: A bioinformatics pipeline for long non-coding RNA data analysis

SUMMARY: The Firalink bioinformatics pipeline has been developed to analyse long non-coding RNA (lncRNA) data generated by targeted sequencing. This pipeline has been first implemented for use with the FIMICS panel containing 2906 lncRNAs useful for investigations in cardiovascular disease. It has b...

Descripción completa

Detalles Bibliográficos
Autores principales:	Chauviere, Louis, Hoffbeck, Lucien, Shoaib, Muhammad, Tessier, Florent, Firat, Huseyin, Satagopam, Venkata, Devaux, Yvan
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	KeAi Publishing 2023
Materias:	Original Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10523182/ https://www.ncbi.nlm.nih.gov/pubmed/37771472 http://dx.doi.org/10.1016/j.ncrna.2023.09.002

Ejemplares similares

Long Non-coding RNAs: Mechanisms, Experimental, and Computational Approaches in Identification, Characterization, and Their Biomarker Potential in Cancer
por: Chowdhary, Anshika, et al.
Publicado: (2021)

Bioinformatic pipelines in Python with Leaf
por: Napolitano, Francesco, et al.
Publicado: (2013)

A review of bioinformatic pipeline frameworks
por: Leipzig, Jeremy
Publicado: (2017)

Bioconductor toolchain for reproducible bioinformatics pipelines using Rcwl and RcwlPipelines
por: Hu, Qiang, et al.
Publicado: (2021)

Single-cell RNA sequencing technologies and bioinformatics pipelines
por: Hwang, Byungjin, et al.
Publicado: (2018)

Reproducible bioinformatics project: a community for reproducible bioinformatics analysis pipelines
por: Kulkarni, Neha, et al.
Publicado: (2018)

Identification of candidate long non-coding RNAs in response to myocardial infarction
por: Zangrando, Jennifer, et al.
Publicado: (2014)

FIMICS: A panel of long noncoding RNAs for cardiovascular conditions()
por: Firat, Huseyin, et al.
Publicado: (2023)

Improving bioinformatic pipelines for exome variant calling
por: Ji, Hanlee P
Publicado: (2012)

Bioinformatics Analysis of Long Non-coding RNA and Related Diseases: An Overview
por: Gong, Yuxin, et al.
Publicado: (2021)

High-throughput bioinformatics with the Cyrille2 pipeline system
por: Fiers, Mark WEJ, et al.
Publicado: (2008)

BIPASS: BioInformatics Pipeline Alternative Splicing Services
por: Lacroix, Zoé, et al.
Publicado: (2007)

Assessment of Common and Emerging Bioinformatics Pipelines for Targeted Metagenomics
por: Siegwald, Léa, et al.
Publicado: (2017)

Reanalysis and optimisation of bioinformatic pipelines is critical for mutation detection
por: Cowley, Mark J, et al.
Publicado: (2019)

A bioinformatic pipeline for simulating viral integration data
por: Scott, Suzanne, et al.
Publicado: (2022)

Comparing bioinformatic pipelines for microbial 16S rRNA amplicon sequencing
por: Prodan, Andrei, et al.
Publicado: (2020)

Author Correction: Single-cell RNA sequencing technologies and bioinformatics pipelines
por: Hwang, Byungjin, et al.
Publicado: (2021)

Practical bioinformatics pipelines for single-cell RNA-seq data analysis
por: He, Jiangping, et al.
Publicado: (2022)

Editorial: The Non-Coding Transcriptome as a New Player in Intercellular Communication
por: Devaux, Yvan, et al.
Publicado: (2022)

Non-coding RNAs and stem cells: the dream team for neural regeneration in Parkinson’s disease?
por: Acharya, Shubhra, et al.
Publicado: (2021)

Coherent pipeline for biomarker discovery using mass spectrometry and bioinformatics
por: Al-Shahib, Ali, et al.
Publicado: (2010)

Development of Bioinformatics Pipeline for Analyzing Clinical Pediatric NGS Data
por: Crowgey, Erin L., et al.
Publicado: (2015)

ZooPhy: A bioinformatics pipeline for virus phylogeography and surveillance
por: Scotch, Matthew, et al.
Publicado: (2019)

repo: an R package for data-centered management of bioinformatic pipelines
por: Napolitano, Francesco
Publicado: (2017)

A bioinformatic pipeline to analyze ChIP-exo datasets
por: Börlin, Christoph S, et al.
Publicado: (2019)

Developing a bioinformatics pipeline for comparative protein classification analysis
por: Pelosi, Benedetta
Publicado: (2022)

Unraveling chloroplast transcriptomes with ChloroSeq, an organelle RNA-Seq bioinformatics pipeline
por: Smith, David Roy, et al.
Publicado: (2017)

DIMPL: a bioinformatics pipeline for the discovery of structured noncoding RNA motifs in bacteria
por: Brewer, Kenneth I, et al.
Publicado: (2021)

TRUEE; a bioinformatic pipeline to define the functional microRNA targetome of Arabidopsis
por: Wong, Gigi Y., et al.
Publicado: (2022)

The Function and Therapeutic Potential of Long Non-coding RNAs in Cardiovascular Development and Disease
por: Gomes, Clarissa P.C., et al.
Publicado: (2017)

Bioinformatics analysis of long non-coding RNA-associated competing endogenous RNA network in schizophrenia
por: Sabaie, Hani, et al.
Publicado: (2021)

Whole transcriptome microarrays identify long non-coding RNAs associated with cardiac hypertrophy
por: Zhang, Lu, et al.
Publicado: (2015)

SimBA: A methodology and tools for evaluating the performance of RNA-Seq bioinformatic pipelines
por: Audoux, Jérôme, et al.
Publicado: (2017)

A lightweight, flow-based toolkit for parallel and distributed bioinformatics pipelines
por: Cieślik, Marcin, et al.
Publicado: (2011)

Microsatellites for Next-Generation Ecologists: A Post-Sequencing Bioinformatics Pipeline
por: Fernandez-Silva, Iria, et al.
Publicado: (2013)

BioMaS: a modular pipeline for Bioinformatic analysis of Metagenomic AmpliconS
por: Fosso, Bruno, et al.
Publicado: (2015)

Considerations for Optimization of High-Throughput Sequencing Bioinformatics Pipelines for Virus Detection
por: Lambert, Christophe, et al.
Publicado: (2018)

iMAP: an integrated bioinformatics and visualization pipeline for microbiome data analysis
por: Buza, Teresia M., et al.
Publicado: (2019)

multiPhATE: bioinformatics pipeline for functional annotation of phage isolates
por: Ecale Zhou, Carol L, et al.
Publicado: (2019)

biogitflow: development workflow protocols for bioinformatics pipelines with git and GitLab
por: Kamoun, Choumouss, et al.
Publicado: (2021)

Cannot write session to /tmp/vufind_sessions/sess_7r3c3ag3rjsgnr26tclg3rrsvq