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Energy landscapes and heat capacity signatures for peptides correlate with phase separation propensity

Phase separation plays an important role in the formation of membraneless compartments within the cell and intrinsically disordered proteins with low-complexity sequences can drive this compartmentalisation. Various intermolecular forces, such as aromatic–aromatic and cation–aromatic interactions, p...

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Autores principales: Nicy, Collepardo-Guevara, Rosana, Joseph, Jerelle A., Wales, David J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cambridge University Press 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10523320/
https://www.ncbi.nlm.nih.gov/pubmed/37771761
http://dx.doi.org/10.1017/qrd.2023.5
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author Nicy
Collepardo-Guevara, Rosana
Joseph, Jerelle A.
Wales, David J.
author_facet Nicy
Collepardo-Guevara, Rosana
Joseph, Jerelle A.
Wales, David J.
author_sort Nicy
collection PubMed
description Phase separation plays an important role in the formation of membraneless compartments within the cell and intrinsically disordered proteins with low-complexity sequences can drive this compartmentalisation. Various intermolecular forces, such as aromatic–aromatic and cation–aromatic interactions, promote phase separation. However, little is known about how the ability of proteins to phase separate under physiological conditions is encoded in their energy landscapes and this is the focus of the present investigation. Our results provide a first glimpse into how the energy landscapes of minimal peptides that contain [Image: see text] – [Image: see text] and cation– [Image: see text] interactions differ from the peptides that lack amino acids with such interactions. The peaks in the heat capacity ( [Image: see text] ) as a function of temperature report on alternative low-lying conformations that differ significantly in terms of their enthalpic and entropic contributions. The [Image: see text] analysis and subsequent quantification of frustration of the energy landscape suggest that the interactions that promote phase separation lead to features (peaks or inflection points) at low temperatures in [Image: see text] . More features may occur for peptides containing residues with better phase separation propensity and the energy landscape is more frustrated for such peptides. Overall, this work links the features in the underlying single-molecule potential energy landscapes to their collective phase separation behaviour and identifies quantities ( [Image: see text] and frustration metric) that can be utilised in soft material design.
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spelling pubmed-105233202023-09-28 Energy landscapes and heat capacity signatures for peptides correlate with phase separation propensity Nicy Collepardo-Guevara, Rosana Joseph, Jerelle A. Wales, David J. QRB Discov Research Article Phase separation plays an important role in the formation of membraneless compartments within the cell and intrinsically disordered proteins with low-complexity sequences can drive this compartmentalisation. Various intermolecular forces, such as aromatic–aromatic and cation–aromatic interactions, promote phase separation. However, little is known about how the ability of proteins to phase separate under physiological conditions is encoded in their energy landscapes and this is the focus of the present investigation. Our results provide a first glimpse into how the energy landscapes of minimal peptides that contain [Image: see text] – [Image: see text] and cation– [Image: see text] interactions differ from the peptides that lack amino acids with such interactions. The peaks in the heat capacity ( [Image: see text] ) as a function of temperature report on alternative low-lying conformations that differ significantly in terms of their enthalpic and entropic contributions. The [Image: see text] analysis and subsequent quantification of frustration of the energy landscape suggest that the interactions that promote phase separation lead to features (peaks or inflection points) at low temperatures in [Image: see text] . More features may occur for peptides containing residues with better phase separation propensity and the energy landscape is more frustrated for such peptides. Overall, this work links the features in the underlying single-molecule potential energy landscapes to their collective phase separation behaviour and identifies quantities ( [Image: see text] and frustration metric) that can be utilised in soft material design. Cambridge University Press 2023-09-05 /pmc/articles/PMC10523320/ /pubmed/37771761 http://dx.doi.org/10.1017/qrd.2023.5 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/This is an Open Access article, distributed under the terms of the Creative Commons Attribution licence (http://creativecommons.org/licenses/by/4.0), which permits unrestricted re-use, distribution and reproduction, provided the original article is properly cited.
spellingShingle Research Article
Nicy
Collepardo-Guevara, Rosana
Joseph, Jerelle A.
Wales, David J.
Energy landscapes and heat capacity signatures for peptides correlate with phase separation propensity
title Energy landscapes and heat capacity signatures for peptides correlate with phase separation propensity
title_full Energy landscapes and heat capacity signatures for peptides correlate with phase separation propensity
title_fullStr Energy landscapes and heat capacity signatures for peptides correlate with phase separation propensity
title_full_unstemmed Energy landscapes and heat capacity signatures for peptides correlate with phase separation propensity
title_short Energy landscapes and heat capacity signatures for peptides correlate with phase separation propensity
title_sort energy landscapes and heat capacity signatures for peptides correlate with phase separation propensity
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10523320/
https://www.ncbi.nlm.nih.gov/pubmed/37771761
http://dx.doi.org/10.1017/qrd.2023.5
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